Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02969 ATGGGCTTCTATGGTGGAGGGTTTCAGAATTTCAACAGCAGATCATACCAACCTCATGTTGGGGAGTTTGGAGATGAATGTTGTGGGTTTGTGGAGGATGTTAAGCCACCTCCTTATCCTAATGCTGCCAGAGAAAATTGGGGAATTCAAGGTAATCAAATGGCAGCAGTTGAAGAGCCTAATATAAAAGTAGGAAGGTACTCAGAAGAAGAAAGGAAAGAAAGAATTCTCCGATATTTGAAGAAAAGAAACCAAAGAAACTTTAACAAAACCATCAAGTACGCATGTCGGAAAACCTTAGCTGATAGGCGAGTCAGGGTTAGGGGAAGGTTTGCAAGAAACAATGAGCTTTGTGAAGAAGACATGGCAACAAAAAAGCATGAGAATCATCATCATCACCACAAAGAAGACTTTTATGGTGGCGATTCAATCCAGTTTCAGTTAAAGAATGATGAGGAAGACTGGCTGCAAGAGGCCATGGCAAGTCTAGTGTATTTATCTCAATCTTCACCGGAAGATATGTAA 525 0.4076 MGFYGGGFQNFNSRSYQPHVGEFGDECCGFVEDVKPPPYPNAARENWGIQGNQMAAVEEPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCEEDMATKKHENHHHHHKEDFYGGDSIQFQLKNDEEDWLQEAMASLVYLSQSSPEDM 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02969 174 Pfam CCT motif 72 114 IPR010402 GO:0005515
Pumo4g02969 174 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 38 129 IPR045281 GO:0009909
Pumo4g02969 174 ProSiteProfiles CCT domain profile. 72 114 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02969 Pumo-Chr4 57680842 57683289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02969 68 122 C2C2-CO-like Transcription Factor Family AT5G57660 47.273 5.75e-10 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo4g02969 CCT 4e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02969 - - gmx:102660475 337.035