Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02966 ATGGTTCAGCCAACATGGTTCTTTTCACTTTTGGTATTAACGTTTCAACTTTCAGCATCAGGGGTTAATTCGGTGGACTTAGTTTTGATCAACCAATGTAACTACACAGTGTGGCCAGCGTTAACCAGCAGCGGACACACAACTCTTGCAACAACCGGTCTCCGTTTGAGAACGGGAGAATCCTCCACCATCACCGCACCAGCCATGTGGGCAGGCCGCATCTGGGGCCGCACTCTCTGCGCTACCAACACAACTACTGGAAAATTTTCCTGTGCCACTGGTGATTGTGACTCCGGCAAGGTGGCATGCGGCGGAAGTGGAGGCTCGCCGCCGGTTACGTTGGCGGAGTTCTCAACAGGCAGAGGCACCATTTTCGACTTCTATGATGTCAGCTTGGTGAATGGGTTTAACGTGCCGATGATGGTGGTTCCTGACAATTTTACCAGTGGCAATTGCAATAGCACGGGGTGTGCGGTGGATCTGAACGCGGTGTGCCCGGCGGAGCTGAAGGTGATAGATAGTAAAGGGCAAGTGGTGGGATGCAAAAGTGCTTGTGATGCGTTCGAAACTAACATTTATTGTTGCACCGGGAATTATTCGACTCGGGAAACGTGCGGGCCAACCTCGTACTCGAAGTTATTCAAAAACGCCTGCCCGCAAGCCTACAGCTACGCATTGGATGATAAAACCAGCAGCTTCACATGTTCCAACGCTGCAAATTACAACGTCCTCTTTTGTCCCGCATCTAACGCCACCAGCCGAAGTGTTGGCAACTCACTCATTGTCGGTGACTCACTCATTGCTGGTAATGGGACATCTCGGTGGCTTTCTTCTTCACGTGAGTTTGCATTTGGGTTTTACCAACTTCCTAATGAGTTTTTCTTATTGGCTATATGGTATGACAAGATGCCAAATAGGACCATTATTTGGTATGCAAATGGAAACAACCATGCTCCTATAGGATCAAGGTTAGAACTAAATGACTCTCGTGGATTGGTACTCAGTAACCCCCAAGGTTTAGAGCTATGGAGATCAAATTTTACGTCAGGTACAATTTTTAATGGTCTAATGAACGATGATGGAAATTTCAAACTATTAGATCAAAATTTTGTGTCATTATGGGAGACTTTCACTCATCCAACTGACACATTGGTACCTACTCAAGTAATGGAGTTAGATGGAGAACTTTCTTCTCGACAAGGTGAATTTAACTTTTCACGTGGAAGGTTCAAACTTCATCTACAAGAGGATGGGAATCTTGTGCTTAACCTTATCAATTTGCCTAGCAACTACAATTATGAGCCTTACTATGATACTGGTACTGCTGATGCTAATAACCAAACAAATGTTGGCATGAAATTGATATTTGACGAATCAGGCTTCTTATACATACTGAAAAAAAGTGGGGAGAAGTTTTACATCACCAAGCCAAATAAGATAGTCTCAACTAACGACTTCCACTACAAAGCAACGATAAATTATGATGGAGTTTTTACTATATCATATTACCCCAAAGATCCAAAAAATGGACAAAGATGGGTCACTAAAGAGACTATACCAGAAAACATTTGTTTGGATTCTACATCCATTAATGGCGAAGGTGTTTGTGGCTTTAATAGCATATGCAAACTCAAAGATGACCAAAGGCCAATGTGTAATTGCCCAGAGGGGTATTCATTAATTGATTCAAATAACATGTATGGTGGCTGCATACCAAATTTCCAAGTTGTTTGTCAAGGAGGTGGGCATATGGGTTCTCAAGATGGTTACATAATGAAGGAATTACAAAACACTGATTGGCCTAAATCTGATTATGAAACACTCAGTCCTTGTACTCTAAAAGAATGCACAAAATCTTGTTTGCAAGATTGCTTATGTGTGTTGGCTACTTTCAATGCAAGTTCTTGTTGGAAGAAGAAACTACCACTCACAAATGGGAGAAAAGATGATAGAGTAAATGCAACTTCTGTCATAAAATTGATGAAAAACATTGACCCATTCAGCTTTTTCCCAAACCCAAATGAGAAGAAAGATCATAATGCCTTAATCATTGTGATATCAGTTCTTTTGGGCAGCTCTGTGTTGGCCATTTTAATGTTGGTTGGTGCAATATATTTTGGTTTCTTCGGCAACCGCAAGAAGATAAAAAATAATAGAACCAACAACAATGTTGTTGACAAAATTTTGCGTAGTTTTACCTTTAAGGAACTTGTAGAAGCAACATGCAACTTTAAAGAAGAATTAGGAAGGGGATCTTTCAGCATTGTCTACAAAGGTACAATAGAGATGAATAGTGTGGCTGTTAAGAAATTAGACAAGTTGTTCCAAGATAATGATAAGGAATTCCAGACTGAAGTCAATGTGATAAGCCAAACTCATCATAGGAACCTAGTTCGTCTACTAGGATATTGCAATGAAGGACAACATCGAGTTTTGGTATATGAATTTATGAGCAATGGCACTTTAGCAAGTTTCCTTTTCACCCCTTTGAAATCAAATTGGGGCCAACGGTTTGACATTGCCCTTGGGATTGCGAGAGGTCTTGTTTATTTGCATGAGGAATGTTGCACCCAAATCATCCATTGTGACATAAAGCCACAAAATATACTTCTAGATGATCAATATAATGCCAGAATTTCAGATTTTGGGTTAGCAAAGCTATTATTGATCAATCAAAGTCACACTGAAACTGGAATTAGAGGAACAAAAGGGTATGTTGCACCAGATTGGTTTAGAAGTGCACCAATCACTTCTAAGGTTGACAGTTATAGTTTTGGTGTGTTGTTACTAGAGATCATTTGTTGTAGGAGGAATGTAGAAAAGGAGCTTGTTAATGAAGAAAAGGGGATATTGACTGATTGGGCATATGATTGCTACAAGACTAAAAGATTATACGATCTTCTAGAAAATGATGATGAAGCTATTGATAACATAAAGAGCTTTGAAAAACTTGTGATGATTGCTATTTGGTGCATTCATGAAGATCCCTCTCTTAGACCAACTATGAAGAAGGTTTTATTGATGCTAGAAGGAATTGTTGAAGTTTCAATACCCCCAAGTCCCTACCTTCATGGTTCTATTAGTTGA 3087 0.4033 MVQPTWFFSLLVLTFQLSASGVNSVDLVLINQCNYTVWPALTSSGHTTLATTGLRLRTGESSTITAPAMWAGRIWGRTLCATNTTTGKFSCATGDCDSGKVACGGSGGSPPVTLAEFSTGRGTIFDFYDVSLVNGFNVPMMVVPDNFTSGNCNSTGCAVDLNAVCPAELKVIDSKGQVVGCKSACDAFETNIYCCTGNYSTRETCGPTSYSKLFKNACPQAYSYALDDKTSSFTCSNAANYNVLFCPASNATSRSVGNSLIVGDSLIAGNGTSRWLSSSREFAFGFYQLPNEFFLLAIWYDKMPNRTIIWYANGNNHAPIGSRLELNDSRGLVLSNPQGLELWRSNFTSGTIFNGLMNDDGNFKLLDQNFVSLWETFTHPTDTLVPTQVMELDGELSSRQGEFNFSRGRFKLHLQEDGNLVLNLINLPSNYNYEPYYDTGTADANNQTNVGMKLIFDESGFLYILKKSGEKFYITKPNKIVSTNDFHYKATINYDGVFTISYYPKDPKNGQRWVTKETIPENICLDSTSINGEGVCGFNSICKLKDDQRPMCNCPEGYSLIDSNNMYGGCIPNFQVVCQGGGHMGSQDGYIMKELQNTDWPKSDYETLSPCTLKECTKSCLQDCLCVLATFNASSCWKKKLPLTNGRKDDRVNATSVIKLMKNIDPFSFFPNPNEKKDHNALIIVISVLLGSSVLAILMLVGAIYFGFFGNRKKIKNNRTNNNVVDKILRSFTFKELVEATCNFKEELGRGSFSIVYKGTIEMNSVAVKKLDKLFQDNDKEFQTEVNVISQTHHRNLVRLLGYCNEGQHRVLVYEFMSNGTLASFLFTPLKSNWGQRFDIALGIARGLVYLHEECCTQIIHCDIKPQNILLDDQYNARISDFGLAKLLLINQSHTETGIRGTKGYVAPDWFRSAPITSKVDSYSFGVLLLEIICCRRNVEKELVNEEKGILTDWAYDCYKTKRLYDLLENDDEAIDNIKSFEKLVMIAIWCIHEDPSLRPTMKKVLLMLEGIVEVSIPPSPYLHGSIS 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02966 1028 ProSitePatterns Serine/Threonine protein kinases active-site signature. 859 871 IPR008271 GO:0004672|GO:0006468
Pumo4g02966 1028 Gene3D - 253 380 IPR036426 -
Pumo4g02966 1028 Gene3D - 381 519 IPR036426 -
Pumo4g02966 1028 Pfam Protein kinase domain 744 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02966 1028 SUPERFAMILY Protein kinase-like (PK-like) 725 1010 IPR011009 -
Pumo4g02966 1028 ProSiteProfiles Protein kinase domain profile. 742 1023 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02966 1028 FunFam Serine/threonine-protein kinase 255 379 - -
Pumo4g02966 1028 SMART tha2 27 247 IPR001938 -
Pumo4g02966 1028 Pfam Thaumatin family 31 247 IPR001938 -
Pumo4g02966 1028 FunFam S-receptor-like serine/threonine-protein kinase 711 816 - -
Pumo4g02966 1028 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 266 1020 - -
Pumo4g02966 1028 SUPERFAMILY Osmotin, thaumatin-like protein 27 247 IPR037176 -
Pumo4g02966 1028 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 817 1017 - -
Pumo4g02966 1028 FunFam Serine/threonine-protein kinase 381 527 - -
Pumo4g02966 1028 Gene3D Transferase(Phosphotransferase) domain 1 817 1017 - -
Pumo4g02966 1028 Pfam D-mannose binding lectin 307 393 IPR001480 -
Pumo4g02966 1028 SMART serkin_6 742 1009 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02966 1028 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Pumo4g02966 1028 ProSiteProfiles Bulb-type lectin domain profile. 251 378 IPR001480 -
Pumo4g02966 1028 SUPERFAMILY alpha-D-mannose-specific plant lectins 294 441 IPR036426 -
Pumo4g02966 1028 Gene3D Thaumatin 26 247 IPR037176 -
Pumo4g02966 1028 PRINTS Pathogenesis-related protein signature 52 61 IPR001938 -
Pumo4g02966 1028 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Pumo4g02966 1028 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Pumo4g02966 1028 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Pumo4g02966 1028 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Pumo4g02966 1028 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Pumo4g02966 1028 FunFam Thaumatin-like protein 1a 25 247 - -
Pumo4g02966 1028 ProSitePatterns Protein kinases ATP-binding region signature. 748 770 IPR017441 GO:0005524
Pumo4g02966 1028 CDD STKc_IRAK 748 1012 - -
Pumo4g02966 1028 CDD TLP-PA 29 246 - -
Pumo4g02966 1028 Gene3D Phosphorylase Kinase; domain 1 707 816 - -
Pumo4g02966 1028 SMART blect_4 257 380 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02966 Pumo-Chr4 57590147 57599241 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02966 729 1011 Receptor kinase-like Gene Family AT1G60800 42.808 4.56e-68 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Pumo4g02966 Pkinase 6.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02966 - - gmx:100796619 1640.55