Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02954 ATGCAGATCTTCGTGAAGACTTTGACCGGCAAGACCATCACCCTCGAGGTCGAGAGCAGCGACACCATCGACAACGTCAAGGCCAAGATCCAGAATCTTACGACTGTTGCATCTTGCTGCAGACTGATATATGCCGGTAAGCAGCTTGCTGATGACAAAACAGCTAAAGAGTACAACATTGAGGGTGGTTCTGTACTTCACTTGGTGCTTGCATTGAGGGGTGGTACTTATTAG 234 0.4829 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNLTTVASCCRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGTY 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02954 77 PANTHER UBIQUITIN 1 75 - -
Pumo4g02954 77 PRINTS Ubiquitin signature 11 31 IPR019956 -
Pumo4g02954 77 PRINTS Ubiquitin signature 52 73 IPR019956 -
Pumo4g02954 77 SUPERFAMILY Ubiquitin-like 1 75 IPR029071 -
Pumo4g02954 77 SMART ubq_7 1 71 IPR000626 GO:0005515
Pumo4g02954 77 Pfam Ubiquitin family 3 73 IPR000626 GO:0005515
Pumo4g02954 77 Gene3D - 1 77 - -
Pumo4g02954 77 FunFam Polyubiquitin-C 1 75 - -
Pumo4g02954 77 ProSiteProfiles Ubiquitin domain profile. 1 75 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02954 Pumo-Chr4 57268269 57271612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02954 1 75 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 71.053 2.34e-30 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02954 K12158 - gmx:100794152 101.293