Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02953 ATGGGGAAAGGAAGAGCACCATGCTGTGATAAGTCTCAAGTGAAGAGAGGTCCTTGGAGCCCTGCAGAAGACCTTAAGCTCATAGCCTTCATCCAGAAATATGGCCATGAAAACTGGCGCGCTCTCCCAAAACAAGCAGGACTTCTGCGATGTGGGAAAAGTTGTCGTTTGAGATGGATCAATTATCTCAGGCCTGATGTGAAGAGAGGCAATTTTACACCAGAGGAAGAGGAAACCATAATAAGGCTACACAAGGCCTTGGGAAACAAGTGGTCAAAGATTGCATCACGTTTGCCTGGTAGGACTGACAATGAGATCAAGAATGTGTGGAACACCCACTTGAAGAAAAGATTGGCTCCCAAAAAAGGTTCACAATCAAGTGCAGATGAATCCAAGCCAGAATCATCAATAACCACCTCCTCATCCTCTTCATCTGAATCATTTTTCTCTAATGAGAGACCAAATTCACCAAAGACCACAACACCTGGTAACAATGAATTCAATGACCAAGCTGAGAAAATGGAGCAGGATTCAGAAAAACAAGTGTCCAATGAACTCATTGGCATCACTGAGGATCCAAAAGAGTCATCAGTTTCATTATCTTCTGTTGAGTCAAACATTGAAAACTCAAGCCAGATTGTTGCACACAAGCCAGAAGAGCAATTGGCCTCTCCATTACCCTACATAGGACCTTATGATGTTGGCAGCATATTAGAAGAGGTGGATAAACCAAACCACCTGATTGAAATTCCATGGGAATCAGATTATGATTTTTGGAATTTGTTAGATGATGATAGCCTTGGATCTTTTCAATCAAATGAAGTCCAATTAGGTGAGTTACCAGCCATACAAAACATCATTCTTGGAGAAGAGGGTGTTCAAGGTGCTGAAGCCAAGAAGTGGTCCCATGATTTTGAGAATGAGTTTGGAGTAGTAGGTGAGATAAAGGAGTCAAACAAGGATCATTTCCTACCAAAGAACTATGCAGTTGAGCAAGAAATGGACCACACTCAAGCATTTGATTTTGATGACATGACAAGGCCAGAATCTGAATTAGACTTTGGTTATATCCCATTATGGCCCTCTTGGCCCCAAAATAATAATACTAGTCTTTAG 1116 0.4167 MGKGRAPCCDKSQVKRGPWSPAEDLKLIAFIQKYGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTPEEEETIIRLHKALGNKWSKIASRLPGRTDNEIKNVWNTHLKKRLAPKKGSQSSADESKPESSITTSSSSSSESFFSNERPNSPKTTTPGNNEFNDQAEKMEQDSEKQVSNELIGITEDPKESSVSLSSVESNIENSSQIVAHKPEEQLASPLPYIGPYDVGSILEEVDKPNHLIEIPWESDYDFWNLLDDDSLGSFQSNEVQLGELPAIQNIILGEEGVQGAEAKKWSHDFENEFGVVGEIKESNKDHFLPKNYAVEQEMDHTQAFDFDDMTRPESELDFGYIPLWPSWPQNNNTSL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02953 371 Gene3D - 70 142 - -
Pumo4g02953 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Pumo4g02953 371 SMART sant 68 116 IPR001005 -
Pumo4g02953 371 SMART sant 15 65 IPR001005 -
Pumo4g02953 371 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Pumo4g02953 371 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pumo4g02953 371 MobiDBLite consensus disorder prediction 124 169 - -
Pumo4g02953 371 FunFam Transcription factor RAX3 9 69 - -
Pumo4g02953 371 FunFam MYB transcription factor 70 145 - -
Pumo4g02953 371 CDD SANT 71 114 IPR001005 -
Pumo4g02953 371 MobiDBLite consensus disorder prediction 114 203 - -
Pumo4g02953 371 Coils Coil 164 184 - -
Pumo4g02953 371 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 201 - -
Pumo4g02953 371 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Pumo4g02953 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pumo4g02953 371 CDD SANT 18 63 IPR001005 -
Pumo4g02953 371 Gene3D - 16 68 - -
Pumo4g02953 371 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pumo4g02953 371 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02953 Pumo-Chr4 57244295 57247191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02953 1 311 MYB Transcription Factor Family AT1G79180 45.272 1.56e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo4g02953 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02953 K09422 - gmx:100101836 662.144