Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02943 ATGGCACTAAGCACATACTTCAACTGTGACACTCTTCAAATTCCCAACTTAGAAACAAACACTTTCCATGAAGCCATGCCAGAAGTAGCAGCACCAAACCTCCAGCACTTTCTTCCCTACTCAGATGAAAGCAGCTTCTTCCTTTCAAACGTGCTTTTTGAGAACTATATTGACCCAACTGGTGGTTTTCTCTATCCTCCAGAGATCAACCCTCCTTATGATCCCTTCATTTCACTCACTCATCATGGTGACACTTTCCCGACTCATGAAGATTACAATCTTCTCCCATGCCCTAAACGCCAAAAGTGCTGCTATGAGGAACAACAACAACAACAAGAACAACAAGAACACGTGTACTCTTCACTGCAAGAGCTTACTACACCAACACTACCATCCAATTTCTTAGATGGGTTTGTTGTGCCTTATGATAATTGTTGCTCCTTCCAAGCAGAGGAACTGCAACCACAACTCTTCTCTGAGGTTCCACAATTTGGTAGTACTTGTGTGGATGTTCAGTGTGAGAAGAAAGGTAACGAGAGAACCATATCTCCACAGAGCGTAGCGGCGAGAGAAAGGAGAAGAAGGATCACTGAGAAGACTCAAGAGCTTGGGAAGTTGGTTCCTGGTGGACCAAAGATGAACACTGCTGAGATGCTTCATGCAGCTGCAAAGTATGTTAAGTACCTTCAAGCCCAAGTTGGAATGCTTGAACTCATGAACACACTCAAGGAAGATAAAGCAGCACCTCCTTCTGAAATTCTACACTCTCTGGTTGTTTCTCCCTTTGTTCAAGAGAAGTTGTACACTGAGGAAAGGTGCTTTGTGCCAAAAGAAACTGTCACCACTTTGACAAATCATGAGGATGTTCAATCAAGACCTACCATCCTTGAGGATCTTAAACAGCTGAATGGGACAGACACTGAGAAGAAAGCAAAGCAAGAATAA 945 0.4339 MALSTYFNCDTLQIPNLETNTFHEAMPEVAAPNLQHFLPYSDESSFFLSNVLFENYIDPTGGFLYPPEINPPYDPFISLTHHGDTFPTHEDYNLLPCPKRQKCCYEEQQQQQEQQEHVYSSLQELTTPTLPSNFLDGFVVPYDNCCSFQAEELQPQLFSEVPQFGSTCVDVQCEKKGNERTISPQSVAARERRRRITEKTQELGKLVPGGPKMNTAEMLHAAAKYVKYLQAQVGMLELMNTLKEDKAAPPSEILHSLVVSPFVQEKLYTEERCFVPKETVTTLTNHEDVQSRPTILEDLKQLNGTDTEKKAKQE 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02943 314 Coils Coil 105 125 - -
Pumo4g02943 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 240 IPR036638 GO:0046983
Pumo4g02943 314 Gene3D - 180 248 IPR036638 GO:0046983
Pumo4g02943 314 Pfam Helix-loop-helix DNA-binding domain 190 230 IPR011598 GO:0046983
Pumo4g02943 314 SMART finulus 186 235 IPR011598 GO:0046983
Pumo4g02943 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 229 IPR011598 GO:0046983
Pumo4g02943 314 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 110 280 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02943 Pumo-Chr4 57054665 57056427 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02943 64 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 39.080 1.82e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g02943 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02943 - - gmx:102665938 510.375