Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02942 ATGGCACTGAGCACGTACTTCAACTATGACACTCTTCAAATTCCCAACTTAGACACAAACACTTTCCATGAAGCCATGCCAGAAGAAGTAGCAGCGCCAAACCTCCAACACTTATTTCCCTACTCAGATGAAAGCAGCTTCTTCCTTTCAAACGCGCTTTTTGAGAACTATATTGACCCAACTGGTGGTTTTCTATATCCTCCAGAGATCAACCCTCCTTATGATCCCTTCAGTTCACTCACTCATCATGATGACACTTTCCCAACTCATGAAGATTACAATCTTCTCCCATGCCCTAAACGCCAAAAGTGCTGCTATGAGGAACAACAACAACAAGAACATATGTACTCTTCACTGCAAGAGCTTACTACACCAACACTACCATCCAATTTCTTAGATGGCACTTGTGTGGATGTTCAGTGTGAGAAGAAAGGTAGCGAGAGAACCATATCTCCACAGAGCGTTGCGGCGAGAGAAAGGAGAAGAAGGATCACTGAGAAGACTCAAGAGCTTGGGAAGTTGGTTCCTGGTGGACCAAAGATGAACACTGCTGAGATGCTTAATGCAGCTGCAAAGTATGTTAAGTTCCTTCAAGCCCAAGTTGGGATGCTTGAACTCATGAACACTCTCAAGGAAGAAGAAGCTGAACCTCCTCCTGAAAATCTACACGCTCTGGTTGTTTCTCCCTTTGTTCAAGAGAAGTTGTACACTGAGGAAAGGTGCTTTGTTCCAAAAGAAATTGTCACCACTTTGACAAATCATGAGGATGTTCAATCAAGACCTACCATCCTTGAGGATCTTAAACAGCTGATTGGGACAGACACTGAGAAGAAAGCAAAGCAAGAATAA 849 0.4346 MALSTYFNYDTLQIPNLDTNTFHEAMPEEVAAPNLQHLFPYSDESSFFLSNALFENYIDPTGGFLYPPEINPPYDPFSSLTHHDDTFPTHEDYNLLPCPKRQKCCYEEQQQQEHMYSSLQELTTPTLPSNFLDGTCVDVQCEKKGSERTISPQSVAARERRRRITEKTQELGKLVPGGPKMNTAEMLNAAAKYVKFLQAQVGMLELMNTLKEEEAEPPPENLHALVVSPFVQEKLYTEERCFVPKEIVTTLTNHEDVQSRPTILEDLKQLIGTDTEKKAKQE 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02942 282 SMART finulus 154 203 IPR011598 GO:0046983
Pumo4g02942 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 197 IPR011598 GO:0046983
Pumo4g02942 282 Gene3D - 148 216 IPR036638 GO:0046983
Pumo4g02942 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 210 IPR036638 GO:0046983
Pumo4g02942 282 Pfam Helix-loop-helix DNA-binding domain 158 198 IPR011598 GO:0046983
Pumo4g02942 282 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 143 244 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02942 Pumo-Chr4 57049274 57051039 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02942 117 274 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 45.912 9.18e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g02942 HLH 3.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02942 - - gmx:102665938 463.381