Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02904 ATGGACCAACCACAACTATTACACGACCCAAATTTCCCCCTCTTCAGAACCCCTCGCAAAACCTCCGATAAACCCCCTTCACCCGCCGCCACTCACAAGCCCCCTTCCTCCGCCGCAACCCCTACCTCCGACAGTGAGCGCCGCGAAGACCCTGACGAAACCGCCACCGCCACCGCCGCTGACGCCGATGCCGAGACGTTCGGCGACCTCGGGCTCGCGGAATGGGCGGTGAAGACGTGCCGGGAGCTCGGGATGCGGAGGCCGCGGCGCGTGCAGCGGCGGTGCATCCCGCGCGTGCTGGAGGGCCGGCACGTGCTCGGCATCGACGAGACCGGGAGCGGGAAGACGGCGGCCTTCGCGCTCCCGATCCTGCACCGCCTCGCCGAGCACCCCTTCGGCGTGTTCGCCCTCGTCGTGACGCCCACGCGCGAGCTCGCCTTCCAGCTCGCCGAGCAGTTCCGCGCCCTCGGCTCCGCCGTGCACCTCCGCATCGCGGTGGTCGTCGGCGGCATGGACATGCTCAGGCAGGCCAAGGAGCTGGCCGCGAGGCCGCACCTCGTCATCGCCACCCCCGGGAGGATCCACAGCTTGCTCCGCAATAACCCTGACATTCCTCCCGTTTTCTCCAGAACCAAGTTCCTTGTCTTGGACGAAGCAGATCGAGTCCTGGATGTTGGTTTTCAGGAGGAATTGAGATTTATCTTTCAGTGCTTACCAGAAAATCGACAAAACCTGTTCTTTTCTGCAACAACTACAAGTAATCTGGAAAAGTTGCGTCAACGTTACCAAGATAAGATGTATGTCTTTGAGGCATATGAAGGCTTTAAAACAGTTGAAACACTTAAGCAACAGGCTATATTCATCCCTAAAAAGGTGAAGGATGTATATTTGATGCATATTTTGTCTAAAATGGAAGATATGGGAATTCGGTCTGCCATCGTATTTATCTCAACTTGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGAAGTGCTTGATCAAGAAGCAGCAGCCCTATATTCATTCAAATCACAAACTCAGAGGCTTGAAGCACTTCATCAATTTAAATCGGGAAAGGTTTCTATACTGCTAGCAACTGATGTCGCCAGCCGTGGTTTGGATATTCCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCACGAGATTATATTCATCGTGTAGGTCGTACAGCAAGAGCAGGAAGAGGGGGACTGGCTTTGAGCCTTGTCACCCAGGTTAGCACATTTTATATGAAATCATATACTCTGTTATTTGAATCTAACTTTACATGCATTGTATTTGTACCTAAGAATTTTTGCTTGAAAGAAATTTTGTTAAATAAATTGTGA 1359 0.521 MDQPQLLHDPNFPLFRTPRKTSDKPPSPAATHKPPSSAATPTSDSERREDPDETATATAADADAETFGDLGLAEWAVKTCRELGMRRPRRVQRRCIPRVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSAVHLRIAVVVGGMDMLRQAKELAARPHLVIATPGRIHSLLRNNPDIPPVFSRTKFLVLDEADRVLDVGFQEELRFIFQCLPENRQNLFFSATTTSNLEKLRQRYQDKMYVFEAYEGFKTVETLKQQAIFIPKKVKDVYLMHILSKMEDMGIRSAIVFISTCRDCHRLSLMLEVLDQEAAALYSFKSQTQRLEALHQFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQVSTFYMKSYTLLFESNFTCIVFVPKNFCLKEILLNKL 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02904 452 Pfam Helicase conserved C-terminal domain 308 404 IPR001650 -
Pumo4g02904 452 Gene3D - 32 270 IPR027417 -
Pumo4g02904 452 MobiDBLite consensus disorder prediction 1 61 - -
Pumo4g02904 452 Gene3D - 276 436 IPR027417 -
Pumo4g02904 452 SMART helicmild6 323 404 IPR001650 -
Pumo4g02904 452 CDD DEADc_DDX49 67 270 - -
Pumo4g02904 452 SMART ultradead3 84 284 IPR014001 -
Pumo4g02904 452 Pfam DEAD/DEAH box helicase 90 258 IPR011545 GO:0003676|GO:0005524
Pumo4g02904 452 CDD SF2_C_DEAD 281 413 - -
Pumo4g02904 452 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 215 223 IPR000629 -
Pumo4g02904 452 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 45 422 - -
Pumo4g02904 452 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 303 443 IPR001650 -
Pumo4g02904 452 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 96 269 IPR014001 -
Pumo4g02904 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 418 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02904 Pumo-Chr4 55949469 55954551 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02904 58 415 Eukaryotic Initiation Factors Gene Family AT3G13920 31.844 2.29e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02904 K14778 - gmx:100804060 711.835