Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02877 ATGGCAGCACTGAACCTTTGCCGCATGGCACTTCGATCCTCAAAGCTTCTCTCTCGCCCTTATCATCTTCTCTCTGTTCAGTTGCAGATGCAGATGCAGCCCTCTTCTCCTCCCTTCACTCGAAAGATGAGCACGGATGCACTGAGTATTGCTTCCCAGCTTAATAGTTCCGGATTGTTGAGGACTCAGGGCCTTATTGGAGGGAAATGGAGTGATGCTTATGATGGCAAAACCATAAAGGTTTATAATCCAGCAACTGGTGAATCTATTGTAGATGTTGCATACATGGGTGGAAGAGAGACAAATGATGCAATTTCTGCAGCCTATGATGCATATAGATCATGGAGCAAAACCACTGCTGCTGAACGAAGCAAATTTCTGAGGAAATGGTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTTTGGGTGAGATAAACTATGGGGCTGGCTTTATTGAGTTTTCTGCTGAGGAGGCAAAACGTATATATGGGGATATAATTCCTGCACCTTTATCTGATCGGCGATTATTTGTTCTAAAGCAGCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAACTTACGCCTCTCACTGCTTTAGCTGCAGCAGAACTCTCCATTCAAGCTGGAATACCACCGGGTGTCGTGAATGTGGTAATGGGAAATGCTCCTGATATTGGGGATGCTTTACTTGCAAGTCCACAGGTAAGGAAGATCACATTCACAGGCTCGACGGCTGTTGGAAAGAAATTGATGGCTGGTTCAGCTGAGACAGTTAAAAAAGTATCTCTGGAACTTGGTGGCAATGCGCCTTGCATAGTTTTTGATGATGCTGACCTGGATGTTGCAGTAAAAGGAACTCTTGCAGCAAAGTTCCGTAATAGTGGACAAACATGCGTTTGTGCAAATAGAATTATTGTGCAAGAAGGTATATATGAGAAGTTTGCAAATGCTTTGCGTGATGCTGTTCAGAATATGAAAGTTGGGGATGGTTTTAGTGAAGGTGTGGTGCAGGGTCCTCTAATCAATGAAGCTGCTGTCGAAAAGGTTGACTCCTTAATTCATGATGCTACATCTAAGGGGGCAAAAGTAATTCTTGGGGGTAAAAGACATAGCCTTGGATTTACCTTTTATGAACCCACGGTCATCAGTGATGTCAACAGTGATATGCGCATATCAAGAGAGGAAGCATTTGGACCTGTTGCACCCCTTTTGAGATTCAAAACTGAAGAGGAGGCTATCAGAATTGCTAATGACACTAATGCAGGTTTGGGTTCGTACGTATTTACAAACAGTATCCAACGATCAGTGGCGTGTTGCTGA 1446 0.4405 MAALNLCRMALRSSKLLSRPYHLLSVQLQMQMQPSSPPFTRKMSTDALSIASQLNSSGLLRTQGLIGGKWSDAYDGKTIKVYNPATGESIVDVAYMGGRETNDAISAAYDAYRSWSKTTAAERSKFLRKWYDLLMVHKEELAQLITLEQGKPLKESLGEINYGAGFIEFSAEEAKRIYGDIIPAPLSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPPGVVNVVMGNAPDIGDALLASPQVRKITFTGSTAVGKKLMAGSAETVKKVSLELGGNAPCIVFDDADLDVAVKGTLAAKFRNSGQTCVCANRIIVQEGIYEKFANALRDAVQNMKVGDGFSEGVVQGPLINEAAVEKVDSLIHDATSKGAKVILGGKRHSLGFTFYEPTVISDVNSDMRISREEAFGPVAPLLRFKTEEEAIRIANDTNAGLGSYVFTNSIQRSVACC 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02877 481 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 305 312 IPR029510 GO:0016491
Pumo4g02877 481 SUPERFAMILY ALDH-like 43 476 IPR016161 GO:0016491
Pumo4g02877 481 CDD ALDH_F5_SSADH_GabD 81 476 - -
Pumo4g02877 481 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 333 344 IPR016160 GO:0016491
Pumo4g02877 481 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 309 476 IPR016163 GO:0016620
Pumo4g02877 481 Pfam Aldehyde dehydrogenase family 72 478 IPR015590 GO:0016491
Pumo4g02877 481 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 76 308 IPR016162 GO:0016491
Pumo4g02877 481 FunFam Succinate-semialdehyde dehydrogenase I 309 480 - -
Pumo4g02877 481 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 55 478 - -
Pumo4g02877 481 FunFam Succinate-semialdehyde dehydrogenase I 76 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02877 Pumo-Chr4 55043634 55058109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02877 3 477 Aldehyde Dehydrogenase Gene Family AT1G79440 73.895 0.0 698
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02877 K17761 - gmx:100808318 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02877 4 55043634 55058109 Pumo4g02877 4 55043634 55058109 ECH