Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02870 ATGGCTCCAATGAGTCTCCCACCTGGGTTTAGGTTCCACCCCACTGATGAAGAGCTTGTTGCTTACTACTTGGAGAGAAAAATAACAGGTCGCTCAATAGAGCTTGACATCATAGCTGAAGTTGATTTATACAAGTGCGAACCTTGGGATTTACCAGATAAATCATTCCTCCCAAGCAAGGACATGGAGTGGTACTTTTACAGTCCTAGGGACAGGAAGTACCCAAATGGGTCAAGAACTAACCGTGCAACACAAGCTGGATACTGGAAAGCTACAGGGAAAGATAGGCCAGTGCACTCTCAAAAGAAGCCAGTTGGCATGAAGAAGACATTGGTATACTATAGAGGTAGGGCACCACATGGGATTAGAACCAACTGGGTTATGCATGAGTATCGCTTAATTGAATCAGTGCCTGGTGCTGCTCTTTCATCTTTGAAGGATTCCTATTCGTTGTGTCGCATTTTCAAGAAGACGATTCAAATTCCAGCCAAACCTAACAAAGAAGAAGAACAAGTGGAGGATGCAAAGAAGGAATCAATGTGGATCTCAGAAGAACAAATGTTAGGGGAAGACTCAAGTGGCACTGAGATTTCTAGAGAAATGGAAACCATGGATGACAAAATTCTCAATCATGAACACCCTAAATTTCCTTGTGATGCTTCTTCCTCTGATCTCACTCAAGGAACATGTACACCCACAGATACCGGTATAGCAGAAGATTTTCAACCACAATTTGCATGTGATGAAGCAAACAGTGCAGCTAACTCATACACAATGGGAATAGGATACCCCACAAATCTATTTCAGGATGTAGAAATACCTAGCTATGGTGGCATGCATTATCAACTCCCATACACACCTTTGGTGCTGGAAGATTTCCCACAAATAAATTTACCAGAGACAAAGTCAACGAAGCCAGAAGTGACTAATGACTGCATGTTATATGACAGATACAGGGACTGCATGAATGGAACACTAGAAGAGATCATCTCTTTGTGTTGCACTCAAGATAATTCCGTCCCTTTTCCCATGCTAGATTGA 1041 0.4236 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATQAGYWKATGKDRPVHSQKKPVGMKKTLVYYRGRAPHGIRTNWVMHEYRLIESVPGAALSSLKDSYSLCRIFKKTIQIPAKPNKEEEQVEDAKKESMWISEEQMLGEDSSGTEISREMETMDDKILNHEHPKFPCDASSSDLTQGTCTPTDTGIAEDFQPQFACDEANSAANSYTMGIGYPTNLFQDVEIPSYGGMHYQLPYTPLVLEDFPQINLPETKSTKPEVTNDCMLYDRYRDCMNGTLEEIISLCCTQDNSVPFPMLD 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02870 346 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Pumo4g02870 346 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Pumo4g02870 346 FunFam Nac domain-containing protein 86 15 160 - -
Pumo4g02870 346 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Pumo4g02870 346 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Pumo4g02870 346 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02870 Pumo-Chr4 54876422 54880788 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02870 1 335 NAC Transcription Factor Family AT1G54330 51.786 3.56e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo4g02870 NAM 1.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02870 - - gmx:100808325 698.738