Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02811 ATGCCAACTTTGATTTCATCTAGGTTTCTTTTGCTTGTTGGAGAGTCACTCCACATGAGAAGGGCTTTGGCCACTTCTAGGTCTGTTTTATTGCACACTAGTGTCAAGTGTATGAGCCAGGTAGAACCCCATCAAGATTCCCTCACCCTTTCTAGCATTGATTTGCAAACTGAAACTGAACCCAGGAACAGAAGCAAAACAAATAAGGTTAAGCCATTGGGTTCACCCTCTGAGAATCTCAAGAGTAAAGGAAAGCCCTTTGACATTAATGAGAAGAAGAAGAAAGGTTTTAGGGTTGTAGAGAAACAGCAAATTGAGTCTGCCCCTTTTGCTGCAAAGTCATTTTCAGAACTTGGCCTCCCACATGTGTTGATTGAGAGGCTAGAGAAGGAGGGTTTCACCGTTCCGACCGAAGTTCAGTCTGCTGCAGTTCCCACCATTCTGAACAACCATGATGTCATAATTCAGTCTTACACGGGTTCGGGGAAGACGTTGGCTTATCTGCTTCCTATACTCTCGGTTGTTGGGCCGCTGAGGGACAGAATTCCTGAAGGCGATGGTGATGGCGGTGAGAATGGGAAGAAGTTGGGAATTGAAGCAGTGATTGTTGCTCCTTCTAGGGAGCTTGGAATGCAGATAGTGAGGGAGTTTGAGAAGGTGCTAGGAATGGATAACAAGAGAGTGGTTCAGCAGCTTGTGGGGGGTGCGAACCGAACGAGGCAGGAAGATGCGCTCAAGAAAAATAAACCTGCCATTGTTGTTGGCACACCTGGTAGGATAGCGGAGCTAAGTGCATCCGGGAAACTTCGCACTCATGGCTGTCGATATTTGGTATTAGATGAAGTTGATGAGCTCTTGTCATTCAATTTCCGGGAAGACATGCATAGGATATTGGAGCATGTAGGGAGGAGATCAGGTGCAGACCTGAACTCGAATTCTAGAAAGGCCGAGCGTCGGTTAATTATGGTTTCTGCAACTGTGCCGTTTTCTGTTGTAAGGGCAGCTAGGAGCTGGGGTTGTAACCCACTTCTTGTCCAAGCTAAGAAAGTTGTCCCGCTTGAAACTGTCTCTCCCTCTGAGCCTGTCAGTTTGTCTCGGTCTTCACCCAGCTCAAGTCCTAGCTCGGCTATGCCATCTCAGGCAGCAGCAGAGAGTCTACCTCCTGCATTGAAACACTATTACTGTGTAACAAGGGTGCAGCACAAAGTTGATGTGTTGAGAAGGTGTATTCATGCACTGGATGCCAAATTTGTGATGGCTTTCATGAACCATACTAAGCAGCTAAAGGATGTTGTCTTCAAGCTGGAGGCCCGTGGTATGAAAGCTGTGGAGTTACATGGGGATCTTGGGAAGCTTGCGAGGTCAACAACTCTGAAGAAATTCAAGAATGGTGAGGTGAGAGTTCTGGTGACAAATGAATTATCAGCAAGGGGTTTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTAGACCTACCGACAGATTCAATTCACTATGCACACCGAGCTGGCCGAACTGGTCGGCTTGGTAGGAATGGTACGGTGGTAACCATATGTGAAGAGCCAGAAGTGTTTGTTGTGAAGAAATTGCAGAAGCAGCTGGGAATACCAATTGCATCCTGTGATTTTGCAGAGGGGAAGCTACTTGTCACTGAAGAAGAGAAAACAGTAAGCACTTCTAGAAGTTGA 1689 0.466 MPTLISSRFLLLVGESLHMRRALATSRSVLLHTSVKCMSQVEPHQDSLTLSSIDLQTETEPRNRSKTNKVKPLGSPSENLKSKGKPFDINEKKKKGFRVVEKQQIESAPFAAKSFSELGLPHVLIERLEKEGFTVPTEVQSAAVPTILNNHDVIIQSYTGSGKTLAYLLPILSVVGPLRDRIPEGDGDGGENGKKLGIEAVIVAPSRELGMQIVREFEKVLGMDNKRVVQQLVGGANRTRQEDALKKNKPAIVVGTPGRIAELSASGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRRSGADLNSNSRKAERRLIMVSATVPFSVVRAARSWGCNPLLVQAKKVVPLETVSPSEPVSLSRSSPSSSPSSAMPSQAAAESLPPALKHYYCVTRVQHKVDVLRRCIHALDAKFVMAFMNHTKQLKDVVFKLEARGMKAVELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVVTICEEPEVFVVKKLQKQLGIPIASCDFAEGKLLVTEEEKTVSTSRS 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02811 562 Pfam DEAD/DEAH box helicase 137 331 IPR011545 GO:0003676|GO:0005524
Pumo4g02811 562 MobiDBLite consensus disorder prediction 48 88 - -
Pumo4g02811 562 MobiDBLite consensus disorder prediction 358 381 - -
Pumo4g02811 562 Pfam Helicase conserved C-terminal domain 408 510 IPR001650 -
Pumo4g02811 562 SMART ultradead3 132 356 IPR014001 -
Pumo4g02811 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 530 IPR027417 -
Pumo4g02811 562 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 345 IPR014001 -
Pumo4g02811 562 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 91 549 - -
Pumo4g02811 562 CDD DEADc 124 346 - -
Pumo4g02811 562 Coils Coil 560 562 - -
Pumo4g02811 562 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 113 141 IPR014014 GO:0003724
Pumo4g02811 562 Gene3D - 80 347 IPR027417 -
Pumo4g02811 562 SMART helicmild6 429 510 IPR001650 -
Pumo4g02811 562 MobiDBLite consensus disorder prediction 358 382 - -
Pumo4g02811 562 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 405 549 IPR001650 -
Pumo4g02811 562 CDD SF2_C_DEAD 390 519 - -
Pumo4g02811 562 Gene3D - 387 549 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02811 Pumo-Chr4 51926727 51929066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02811 114 538 Eukaryotic Initiation Factors Gene Family AT3G19760 23.944 1.15e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02811 - - gmx:100812968 983.786