Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02796 ATGATGCCAGGTAATGGACAGTTAACTGTTCCTCCGGGCTTCAGGTTTCACCCTACTGATGAGGAGCTTCTCTACTATTACCTGAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTCATTAGAGAAATAGATCTCAACAAACTTGAGCCTTGGGATCTCAAAGATAAATGTAGGATTGGGTCAGGGCCTCAGAATGAGTGGTATTTCTTCAGCCACAAGGACAAGAAATACCCAACAGGAACCAGAACAAATCGTGCAACTACTGCTGGTTTTTGGAAAGCAACTGGGAGGGACAAAGCCATATACCACACTAATTCCAAGAGGATTGGCATGAGGAAAACCCTAGTTTTCTACACTGGTCGTGCTCCTCATGGCCAGAAGACTGATTGGATCATGCATGAGTATCGCCTTGATGAAGATGATGCTGATGTTCAAGAAGATGGGTGGGTGGTATGCAGGGTCTTCAAAAAGAAAAACCAAAACCGAGGTTTCCAACAAGAAATGGAAGAAGAGGAGCACTTAACCCACATGAGAGCAAGTGGTCCTTGCCATGTTCTAGAGCCAAAACATCATCACATGCTAGGAGGACTCTATGATTACAACTTTGATGGGACAATGCACCTCCCACAGTTGTTCAGTCCAGAATCAGCTGTTGCACCACCCACTACCACTACTTCCTTGGCCTCATCCATGAATGCCATGGACATCCTTGAGTGCTCTCAAAACCTGTTGAGGCTCACAACCACTGGCTGTGGACTTAACCTTATGCAGCAACAGCATGGAGAGAGGTTCAGTGGTGACTGGTCATTCTTGGACAAGCTTCTAGCATCCCACCATGGCATGGATCAAAGCAAATGTAATCCTCCTACTCATCATCAAGCTGCAACTGCTGTTGGCACTTCAGCTCAGAAATTCCCATTTCATTACCTTGGCTGTGACACCTCCCATGATATTATGAAATTTTCCAAGTAG 978 0.4519 MMPGNGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREIDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDEDDADVQEDGWVVCRVFKKKNQNRGFQQEMEEEEHLTHMRASGPCHVLEPKHHHMLGGLYDYNFDGTMHLPQLFSPESAVAPPTTTTSLASSMNAMDILECSQNLLRLTTTGCGLNLMQQQHGERFSGDWSFLDKLLASHHGMDQSKCNPPTHHQAATAVGTSAQKFPFHYLGCDTSHDIMKFSK 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02796 325 FunFam NAC domain-containing protein 19 163 - -
Pumo4g02796 325 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 231 - -
Pumo4g02796 325 ProSiteProfiles NAC domain profile. 10 159 IPR003441 GO:0003677|GO:0006355
Pumo4g02796 325 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Pumo4g02796 325 SUPERFAMILY NAC domain 5 159 IPR036093 GO:0003677|GO:0006355
Pumo4g02796 325 Gene3D NAC domain 19 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02796 Pumo-Chr4 51631548 51633863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02796 2 325 NAC Transcription Factor Family AT1G79580 54.233 2.82e-118 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo4g02796 NAM 3.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02796 - - gmx:100815632 612.838