Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02785 ATGAAAGCTCAAAATGTTATGGCCAATAGAAACAGCCTCAAGGCCCAAATAGAACCTTCAGAAACCCTAATTTCTCCAACCTTCAGAGGCACATCAACACCACCAACACCTCCACCGCCTCTCCTACTTCCCGGAGCCATGGCCGCCGCCGACTCCTCCGCCGCTTCGTCGCGCCAGCTGTCGCAGAGGGAGGCGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAGCGCTACGTCTTCAGGCGCCGCACCGATGGTATATACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTGCTAGGATTATCGTTGCCATTGAGAACCCACAGGATATCATTGTTCAGTCCGCCAGGCCTTATGGTCAGAGGGCAGTTCTTAAGTTTGCTCAATACACTGGCGCTAATGCAATTGCAGGAAGGCACACTCCTGGAACATTCACTAATCAGATGCAGCAATCCTACAATGAGCCTCGTCTTCTAATTCTAACTGATCCAAGAACAGATCATCAGCCTATCAAGGAAGGTGCTCTTGGAAATATACCAACTATTGCTTTTTGTGACACTGATTCTCCAATGCGGTATGTTGATGTTGGGATTCCTGCCAATAATAAGGGGAAGCATAGCATTGGTTGTCTCTTTTGGCTATTAGCTAGGATGGTACTGCAGATGCGGGGTACTATTCGTCCAGGGCACAAATGGGATGTAATGGTGGATTTATTCTTCTATAGAGAACCTGAGGAGGCCAAGCAACAAGAGGAAGATGAAGCACCACCTGCCCAAGATTTTGCCATTTCAGACTTCAATGCTGCTGGCATTGGCAGCTTCACTGCTGATGGCCAATGGCCTGCTGCAGTCGAACAACCCTGGACTGAAGAAGCTCCACAACCAATCCCAGCAGTTCCTACTAACTGGACCCCAGAAACAGCTGCTGCAGGAGATTGGGGTGAGGATGTTCCAGCTCCAGTTCCAGTTCCAGTTCCAGCACCAGTTCCAGCTCCTCAAGTTGATGCGCCTCCAGCTCAAGCTTTTCCACCTGCTACTGGCTGGGACTTTTGA 1098 0.5036 MKAQNVMANRNSLKAQIEPSETLISPTFRGTSTPPTPPPPLLLPGAMAAADSSAASSRQLSQREADIQMMLAADVHLGTKNCDFQMERYVFRRRTDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQQSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEEAKQQEEDEAPPAQDFAISDFNAAGIGSFTADGQWPAAVEQPWTEEAPQPIPAVPTNWTPETAAAGDWGEDVPAPVPVPVPAPVPAPQVDAPPAQAFPPATGWDF 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02785 365 Pfam Ribosomal protein S2 70 164 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pumo4g02785 365 MobiDBLite consensus disorder prediction 307 365 - -
Pumo4g02785 365 SUPERFAMILY Ribosomal protein S2 63 252 IPR023591 -
Pumo4g02785 365 Gene3D - 66 271 - -
Pumo4g02785 365 PRINTS Ribosomal protein S2 signature 97 106 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pumo4g02785 365 PRINTS Ribosomal protein S2 signature 146 163 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pumo4g02785 365 PRINTS Ribosomal protein S2 signature 171 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pumo4g02785 365 PRINTS Ribosomal protein S2 signature 209 223 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pumo4g02785 365 PRINTS Ribosomal protein S2 signature 67 85 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pumo4g02785 365 PRINTS Ribosomal protein S2 signature 188 199 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pumo4g02785 365 MobiDBLite consensus disorder prediction 334 354 - -
Pumo4g02785 365 CDD RPS2 70 236 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pumo4g02785 365 PANTHER 40S RIBOSOMAL PROTEIN SA 55 337 IPR005707 GO:0003735|GO:0006412|GO:0015935
Pumo4g02785 365 FunFam 40S ribosomal protein SA 66 272 - -
Pumo4g02785 365 Hamap 40S ribosomal protein SA [rps-0]. 54 306 IPR027498 GO:0003735|GO:0006412|GO:0015935
Pumo4g02785 365 NCBIfam 30S ribosomal protein S2 63 258 IPR005707 GO:0003735|GO:0006412|GO:0015935
Pumo4g02785 365 ProSitePatterns Ribosomal protein S2 signature 2. 171 195 IPR018130 GO:0003735|GO:0005840|GO:0006412
Pumo4g02785 365 MobiDBLite consensus disorder prediction 1 30 - -
Pumo4g02785 365 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02785 Pumo-Chr4 51455942 51459167 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02785 49 334 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 71.875 8.98e-151 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02785 K02998 - gmx:100786575 564.688