Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02771 ATGGCTTCTCCGCCACCCTTATCCTTAAACTTCGTCGGTTCAGACACAGACACAGACACGTTCCCAACCGTTACAAGTTCGTTAACACCGCCGTCACGTTCATCTCCGTTACAGAACATCAGTCCCAGCATTCTCATCATCGTAACGGTCCTCGCCGTCACCGTCATCGTCTCTCTCGCCATCTGCTTCCTCCTCCGCCACTTCAACCGCAGCTGCCTCCGCCGCTTCTCCTCCTCCTCCGCCCCGCCCTCCGCCGCCGCCACTCCCATTTTCACCTCCAGCCGCCGCATCTCGCCGGAGATAGTCCAATCCGCCTCCGTCATCGACACTCTCCCGCTCTTCACGTTCTCCTCCGTCACGCGCCGCTCCGCCGCCGCCGACTGCGCCGTGTGCCTCTCGAAGTTCCACCACCACGACCTCCTCCGCCTCCTCCCTCTCTGCTGCCACGCCTTCCACGCCGAGTGCATCGACACGTGGCTCCAGTCGAACCTCACGTGTCCGCTGTGCCGCTCCCCCATCGTCGCCGCCGAGTCCGACCTCGCGAAAATCCTCCGGCCGCCGTCCTCCTCCGCCGGCAGCAGCGACAGCTTCCGCCTCGAGATTGGCAACATCAGCCGCCGCGGAACCGAAACTTCTCCGCCGGCCGCCGTCGGTTCGCGCTCCTACTCCATCGGATCGTTCGAGTATTTGGTGGACGACGAATCGGAGGTTCCGTTCAGCCACGCTCGCAGGACGAGCGTCGATGATGCGAAGGAGTTTCCGGCGCCGGCAAGTAACAACGAGGCCAGTCTCGCCGGCGAGGTTGCCGGCGTTAGAAGCTGGCTTAAGGATTACATTGATAGGGTTTCCGCTTCTATTTCGTCGCGAACGGCGTCGTTTCGAAGCTCTGGAAGGTTCTTCAGTGGTGGCGAGTGTAGTGGTCGCCGAAGCGACGTCGTTCCGGTCGCTGCGGAATACGACATTGAAGGGAACCGAATTGGCGAAGAGATCAGCGAAATGTTTCGTTGGCTTTCAGGGGTATGA 1023 0.6129 MASPPPLSLNFVGSDTDTDTFPTVTSSLTPPSRSSPLQNISPSILIIVTVLAVTVIVSLAICFLLRHFNRSCLRRFSSSSAPPSAAATPIFTSSRRISPEIVQSASVIDTLPLFTFSSVTRRSAAADCAVCLSKFHHHDLLRLLPLCCHAFHAECIDTWLQSNLTCPLCRSPIVAAESDLAKILRPPSSSAGSSDSFRLEIGNISRRGTETSPPAAVGSRSYSIGSFEYLVDDESEVPFSHARRTSVDDAKEFPAPASNNEASLAGEVAGVRSWLKDYIDRVSASISSRTASFRSSGRFFSGGECSGRRSDVVPVAAEYDIEGNRIGEEISEMFRWLSGV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02771 340 Pfam Ring finger domain 127 170 IPR001841 -
Pumo4g02771 340 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Pumo4g02771 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 179 IPR013083 -
Pumo4g02771 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 35 242 - -
Pumo4g02771 340 CDD RING-H2_EL5-like 127 170 - -
Pumo4g02771 340 FunFam E3 ubiquitin-protein ligase ATL6 93 176 - -
Pumo4g02771 340 SUPERFAMILY RING/U-box 110 175 - -
Pumo4g02771 340 SMART ring_2 128 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02771 Pumo-Chr4 51139352 51140374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02771 30 177 C3H Transcription Factor Family AT4G28890 37.342 1.62e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02771 K10663 - gmx:100817751 496.508