Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02757 ATGGCGACGGCGGAGACGGCGGCGGAGGCCGAAGCGAAAACCTACTGGTGCCACGAATGCGACATGAGCGTGTCTCTCACGCTCCCACCCTCCCCGCTTCTCTGCCCGCACTGCCACACGCACTTCCTCGAACTCATGGACTCCCCTCTCTCCCTCTCCCAAAACGACGCCGAATCTCCTCTCTTCGACGTCGTTTTCCAAGACGCCTTATTACTCCTCAACCCCCCTCCCCTCCCCTCCTCAAAACCCCGCCCCCTCCCCTCCCTCCACGTCACCCCCTCCCTCCTCTCCTCCCTCGACCCCAACGGCGTCGTTCTCTGCGCCGTCTGCAAAGACCAAATCGCCCCCGACACCGAAGCCAAAGCCAAGCAGCTCCCCTGCAAACACCTCTACCACTCCGATTGCATCACGCCGTGGATTGAACTCCACGCGTCGTGCCCGCTCTGCAGGTTTCGGCTCGAGGAGGACGAGGATGAGGAAGAAGGTGACGGCGTCATGACGGAGATCAGGAGGGAGCTCATCGCGCGGCTGACGGAGCTGACGGAGGAGGATTTTTACGGCTTGAGGACCACGCTCAACCACATTGCTTCAAGGCACGCGCTCATCGAAGAGAACGAGAACCGCGCGCCAGTTGGTGAGCCTCGCGGCGGCGATTCGGCTTGCTGA 666 0.6231 MATAETAAEAEAKTYWCHECDMSVSLTLPPSPLLCPHCHTHFLELMDSPLSLSQNDAESPLFDVVFQDALLLLNPPPLPSSKPRPLPSLHVTPSLLSSLDPNGVVLCAVCKDQIAPDTEAKAKQLPCKHLYHSDCITPWIELHASCPLCRFRLEEDEDEEEGDGVMTEIRRELIARLTELTEEDFYGLRTTLNHIASRHALIEENENRAPVGEPRGGDSAC 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02757 221 Pfam zinc-ribbon 14 46 IPR039525 GO:0061630
Pumo4g02757 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 167 IPR013083 -
Pumo4g02757 221 SUPERFAMILY RING/U-box 106 156 - -
Pumo4g02757 221 Pfam Ring finger domain 107 150 IPR001841 -
Pumo4g02757 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 63 153 - -
Pumo4g02757 221 ProSiteProfiles Zinc finger RING-type profile. 107 150 IPR001841 -
Pumo4g02757 221 SMART ring_2 107 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02757 Pumo-Chr4 50756498 50759170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02757 8 213 C3H Transcription Factor Family AT3G60080 33.942 1.12e-25 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02757 K11982 - gmx:100782164 328.176