Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02746 ATGGTGGGAGGTGGGAGAATGGGTAAAAGGAAAGCTAGCTATTTGGTTGCTAAAGCATTGGGTGTGGAAACTGATCAGGGTGAGGGTTTTGCTGCAAATCTGTTTCATTGTAATGAATGCTTGGACAGGGCAAGAGATCCGGTTTTGACTTGCTGTGGTCACTTGTTTTGCTGGCCATGCTTTCATAAGTTGGCATATGCTTATTCAAATGTGAAGGAATGTCCGGTTTGTAAAGGAGAGGTCACTGAAGAAGGCATTGTCCCAATTTATGGCAATGCAAGTGTTGATAACAGTGGCAAGTTTGACTTGAACGAAACTGGTTCGACAGTTCCTGCTCGACCTCGTCCACATAGAATTGAGAGTGTTAGGCAGCGATTCAGATACCGAGGAGCTTCTTCTACAATCCAGGACATGCTGCGGTTTGGTAACACTTCTTTGTTTGATTAG 447 0.4452 MVGGGRMGKRKASYLVAKALGVETDQGEGFAANLFHCNECLDRARDPVLTCCGHLFCWPCFHKLAYAYSNVKECPVCKGEVTEEGIVPIYGNASVDNSGKFDLNETGSTVPARPRPHRIESVRQRFRYRGASSTIQDMLRFGNTSLFD 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02746 148 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 136 IPR013083 -
Pumo4g02746 148 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 31 125 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pumo4g02746 148 SUPERFAMILY RING/U-box 33 86 - -
Pumo4g02746 148 SMART ring_2 37 77 IPR001841 -
Pumo4g02746 148 Pfam Zinc finger, C3HC4 type (RING finger) 36 82 - -
Pumo4g02746 148 ProSiteProfiles Zinc finger RING-type profile. 37 78 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02746 Pumo-Chr4 50020100 50022138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02746 23 140 C3H Transcription Factor Family AT3G58030 42.857 6.04e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02746 - - gmx:100780540 249.21