Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02745 ATGGCTCTCTTGTGGACACGTGCAGGGAGTTTATCATCTGACTTGGGAGGTTCTTCGAGGGGCTTGGACGTGAACGTACAGCCGCCGCCGGCGGAGGACGAGGTGGAGGAAGCGGCGGCGCTGTCGTCGTCTCCAAACAGCGCAGCCTCGTCGTTTCAAATGGATCTCTGCATATACAACAACAGAGGAGGGAGCTTCTATAAGAGGGACTCTGAGGGTGAGGCCTATGAGCATCTTAGGGCCTCTTCTAGAGCTAGTGACGATGACGACAATAACGGCGGTGGTAATACCAGAAAGAAACTCAGACTCTCCAAGGATCAATCTGCGTTCCTTGAAGAAAGCTTCAAGGAGCACAACACTCTTAACCCAAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTTCGACCTCGTCAAGTAGAAGTTTGGTTCCAAAACCGTCGAGCAAGGACTAAGTTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTGTTGTGAGACTCTAACGGAAGAGAATAGAAGACTCCACAAGGAGCTTCAAGAATTGAGGGTTTTGAAGACTTCAAACCCATTCTACATGCAATTACCAGCCACAACTTTGACCATGTGCCCTTCTTGTGAGCGCGTGGCCACAAATTCCACCACCACTTCCTCATCCATCAGTGCTACTACAATCAATGCTAATTCAGGAGCCATGGCCAGTGTCAAAACCAGTAACAATAATAACAATGACTCACCCTCCAAAGCCATTGGATTCCCCTTTGGAAAACCAAGGTTTCACCCATTTGTTCACACTAGCCAACAAACCCACCAACAACAATCCCCAGCATCTTGA 840 0.481 MALLWTRAGSLSSDLGGSSRGLDVNVQPPPAEDEVEEAAALSSSPNSAASSFQMDLCIYNNRGGSFYKRDSEGEAYEHLRASSRASDDDDNNGGGNTRKKLRLSKDQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRVLKTSNPFYMQLPATTLTMCPSCERVATNSTTTSSSISATTINANSGAMASVKTSNNNNNDSPSKAIGFPFGKPRFHPFVHTSQQTHQQQSPAS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02745 279 CDD homeodomain 98 155 IPR001356 GO:0003677
Pumo4g02745 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 22 230 - -
Pumo4g02745 279 MobiDBLite consensus disorder prediction 264 279 - -
Pumo4g02745 279 MobiDBLite consensus disorder prediction 235 279 - -
Pumo4g02745 279 MobiDBLite consensus disorder prediction 79 103 - -
Pumo4g02745 279 MobiDBLite consensus disorder prediction 235 250 - -
Pumo4g02745 279 Coils Coil 167 187 - -
Pumo4g02745 279 Gene3D - 102 152 - -
Pumo4g02745 279 ProSitePatterns 'Homeobox' domain signature. 129 152 IPR017970 GO:0000981|GO:0006355
Pumo4g02745 279 SUPERFAMILY Homeodomain-like 85 155 IPR009057 -
Pumo4g02745 279 MobiDBLite consensus disorder prediction 1 31 - -
Pumo4g02745 279 Pfam Homeodomain 98 152 IPR001356 GO:0003677
Pumo4g02745 279 FunFam Homeobox-leucine zipper protein 18 82 159 - -
Pumo4g02745 279 Pfam Homeobox associated leucine zipper 154 186 IPR003106 GO:0006355|GO:0043565
Pumo4g02745 279 ProSiteProfiles 'Homeobox' domain profile. 94 154 IPR001356 GO:0003677
Pumo4g02745 279 SMART HOX_1 96 158 IPR001356 GO:0003677
Pumo4g02745 279 SMART halz 154 197 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02745 Pumo-Chr4 49929174 49930873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02745 13 210 Homeobox Transcription Factor Family AT3G60390 59.048 2.46e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo4g02745 Homeodomain 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02745 K09338 - gmx:100778742 398.667