LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g02732	ATGGCTTTGGAAGTTGTGGGGGGAGCTTTCTTGGAGGCTGTTTTCAGTGCCTTGCTTAAAGCAATAGCTTCTCCTGTGGTGGTTGACTTGTTTAAGAAGAGCAAAAGCAGTGACATGTTGCTGAGGAGGTTGAAGATCTCCTTGTTGTCTGTTAATGTTGTGCTCAATGATGCAGAGGAAAAGCAAATGAGAAATGGAGCCGTGAAGGAGTGGCTTGATGAACTGAAAGATGTTGCCTTTGATGCTGAAGATCTACTGGATGAGATCTGTACTGATGCCAAGATGTGTGCAGCAACTGAGGTAAACACCCTTAACTCCACTCCTGTGAATCTCTGTGGTAAAGAACTTGAACAGAAAGTAGAAGATATTCTTGAAAGATTAGACTTTATCATAAAACAGAAAGATATGCTTGAGTTGCAAATGGTTAAGGAAGTCAAAATCCAACCGAAGATACCATCTTCATCAGTAGTGGGAACAAGTGATGTGTACGGTAGGGATAGTGATAGAGAGGCCTTAATTACCTTGCTATTTTCGAATGATGCTAGTGATGACTGCAATGTAAGTGTGATTCCTGTGGTGGGTATGGGTGGAATTGGAAAAACAACCTTAGCTCAACTCCTATACAATGATGATAGAGTGCAAAAGGAATTTGATCTCAAAGCTTGGGTTCATGTATCTGACCAGTTTGATATTCTCAAGATTACAAAAACCCTGGTAGAAGAGATCACTTCATGCAGTTGCAGTATTGAAGACTTGAATTTACTCCAACAAGATTTGAAGAAAAGGCTGTTGAAGAAAAAGTTTTTATTCATTTTAGATGATGTTTGGAATCAAAATTATGTTAAATGGGAAACTCTGAAGAACCCGTTTCTGTATGGAGCTCCAGGAAGTAAGATTATTGTAACTACGCGAATTGCTCATGTTGCATCAATCATGCAGACTGTTGAACCTTATTATCTTTCAGAACTGTGTGAAGATGACAGTTGGATGTTGTTTGCAAAACATGTATTTGGATATCCAAATTCAGTTGTCACTCCGAATCTAAGAAAAATTGGTAAAAAAATTGTTAAAAAGTGCAAAGGATTGCCTTTGGCTGTGAAGACACTTGCAGGACTTTTGCGATCTAAAGATGATACACGGGAGTGGTATAAAGTACTAAACAGCAAGATCTGGGATTTGCAAGAAGATGAGAGTAATATTCTCCCAGCTTTGAGATTAAGTTATCATTATCTTCCATCACATTTGAAGATTTGTTTTGCATACTGCTCAATTTTTCCAAAGGACTATGAATTTGAGAAGGAGAAGTTGATTCTGCTGTGGATGGCAGAAGGTTTGTTACAACAAGCAAGAAGACACAAGAGAATTGAAGAAGCTGGAGATGAGTACTTTTATGAATTGATGTCTAGATCATTTTTCCAGCAATCAAAACGTGATAAGTCATGTTTCGTAATGCACCATCTTGTAAATGATTTAGCTCAATTTGTATCTGGAAAATTTTCTGCCAAAGTGGAAGGTAATTATGATGAAGTTGAAGAAAGTACTCGCTACTTGCTGCATTTCATTGCACATAAATTCCCTGCCGTACATTGGAGGGCTATTAGCAAAGCAATTCGCCTACGGACCTTTGTGGAACTAAGGCTGGTTGATAAATCTGTAAACTTTATTGACGAGATGCCATATGACTTGTTGGTGAAGCTAAGGTATTTAAGGGTGTTATCTTTAGCAGGCATCTATCTTCAGGGTTTGCCCGATTCAATTACTGAACTAAAACTTCTGCGCTATCTAGATGTTTCTGGAGCTAAGATGTACAAGCTGCGGCAATGCATTAGCAGGTTGTGCAATTTGCAAACCCTGAAGTTAGTAGGATGTTCTGAGCTACTAGAACTTCCTACAGATATGCATAATCTTGTGCACCTCCGTCATTTAGATATTTCTGGCACTTCTTTGAAATGGATGCCATTACATATGTGTGCATTGAGAAACCTACAAAAGTTGAGTGACTTTTTTGTAGGAAAAGAATGTGGATCTTCAATTGGTGAACTGGGAGAATTATCTGATTTACATGGATCGTTGTTCATTCATCACATTGCACATGTCAGCAATAGGGATTCTGAAAAGGCCAAGTTGAAGGAAAAGGAATTTCTTGACAAGTTAATTTTGGATTGGGGTAAGAATGGTGATACTGATAATTCGCAGCATGAGAAAAATATACTGGACAGTTTACAACCCCATACAAATTTGAAGGAACTTACTATTTATAACTATCCAGGGACAGAATTTCCCAGTTGGGTGGGTGACTCTACATTCTGTAACTTGTTGTTTATGGAGCTTAAGGGTAGCAAATATTGCTATAAATTACCCCCACTCGGACAACTTCCGTCCTTGAAAGAGCTACGGATCGCTAAATTTGATGGATTGGTGAGTGTTGGGTCTGAGTTCTATGGAAATGGAGTTGGTTCTTCAGCTGTCATTGTGAGCTTTCCTTCCTTAGAAACTCTGAGGATTGATGAAATGTCAGCATGGGAGGTGTGGCGTCCTAATGAGGCCTGCAGAGCTTTTGCACTTCTTCAAGAACTTCACATAAATAGCTGTCCCAAACTGACAGGGGATTTACCTATTAACCTTCCATCTTTGACATTACTTGTGATCAGAGACTGCAAGCAGCTCATTTCTTCACTTCCAACAGCTTCAGCTATGCGGGTATTGAATGTTGAGAACTGTGGGAACTTAAAATTTCGAGCACATGTACATCAGTGCCACTGGTCACTCACATCCTTATACTTACACAATAGCTGTGACTCGCTCAAGATTTTGCCATTGGATATCTTTCCCGACCTCAAGTCCCTGGATATTTCAGGTTGTAAAAATCTAACAGCACTTACAGTTTCAGTGACAATGGAAACCCCCCTCCGTTCTTTGTCCATAAGTAACTGTCCAAACTTCACATCTTTTCCCACAGAAGTTTTTTCTGCCCCAAAGCTTACATTGTTGAGTATTGACTGCTGTGAGGAGCTGAAGTCCCTACCACAAAAAATGGATCTGAACATGCCAAGCTTGAGGGAACTCCAGCTATGGAGATGTCCAGAAATTCAGCCATATGAGGATTGGCCATGTGATTTGAGATTAGTCAGCATCTGGAACTGTGACAAACTCATTGCTCGCGAATTAAGATGGAATCAATCCAATCCAATCCGTCTTACACACTTGACAAAGCCTGGGGCATTCTCTATCAGATCTGCTGATTGCTCAACAGTTTCAAGTTCAGCTCAAGTCTCTCCAAGACGAGCATTATCAAGCTCCTCTCAGAGGAAAACCTATGCAGGAAGAGTGTCCAAGAGGGAAGTCATCAGGACAAGCTTACCATGTGGATCACATCAATAA	3381	0.3996	MALEVVGGAFLEAVFSALLKAIASPVVVDLFKKSKSSDMLLRRLKISLLSVNVVLNDAEEKQMRNGAVKEWLDELKDVAFDAEDLLDEICTDAKMCAATEVNTLNSTPVNLCGKELEQKVEDILERLDFIIKQKDMLELQMVKEVKIQPKIPSSSVVGTSDVYGRDSDREALITLLFSNDASDDCNVSVIPVVGMGGIGKTTLAQLLYNDDRVQKEFDLKAWVHVSDQFDILKITKTLVEEITSCSCSIEDLNLLQQDLKKRLLKKKFLFILDDVWNQNYVKWETLKNPFLYGAPGSKIIVTTRIAHVASIMQTVEPYYLSELCEDDSWMLFAKHVFGYPNSVVTPNLRKIGKKIVKKCKGLPLAVKTLAGLLRSKDDTREWYKVLNSKIWDLQEDESNILPALRLSYHYLPSHLKICFAYCSIFPKDYEFEKEKLILLWMAEGLLQQARRHKRIEEAGDEYFYELMSRSFFQQSKRDKSCFVMHHLVNDLAQFVSGKFSAKVEGNYDEVEESTRYLLHFIAHKFPAVHWRAISKAIRLRTFVELRLVDKSVNFIDEMPYDLLVKLRYLRVLSLAGIYLQGLPDSITELKLLRYLDVSGAKMYKLRQCISRLCNLQTLKLVGCSELLELPTDMHNLVHLRHLDISGTSLKWMPLHMCALRNLQKLSDFFVGKECGSSIGELGELSDLHGSLFIHHIAHVSNRDSEKAKLKEKEFLDKLILDWGKNGDTDNSQHEKNILDSLQPHTNLKELTIYNYPGTEFPSWVGDSTFCNLLFMELKGSKYCYKLPPLGQLPSLKELRIAKFDGLVSVGSEFYGNGVGSSAVIVSFPSLETLRIDEMSAWEVWRPNEACRAFALLQELHINSCPKLTGDLPINLPSLTLLVIRDCKQLISSLPTASAMRVLNVENCGNLKFRAHVHQCHWSLTSLYLHNSCDSLKILPLDIFPDLKSLDISGCKNLTALTVSVTMETPLRSLSISNCPNFTSFPTEVFSAPKLTLLSIDCCEELKSLPQKMDLNMPSLRELQLWRCPEIQPYEDWPCDLRLVSIWNCDKLIARELRWNQSNPIRLTHLTKPGAFSIRSADCSTVSSSAQVSPRRALSSSSQRKTYAGRVSKREVIRTSLPCGSHQ	1126

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo4g02732	1126	Coils	Coil	113	133	-	-
	Pumo4g02732	1126	Gene3D	Ribonuclease Inhibitor	917	1036	IPR032675	-
	Pumo4g02732	1126	SUPERFAMILY	L domain-like	539	930	-	-
	Pumo4g02732	1126	Pfam	Rx N-terminal domain	11	96	IPR041118	-
	Pumo4g02732	1126	PRINTS	Disease resistance protein signature	262	276	-	-
	Pumo4g02732	1126	PRINTS	Disease resistance protein signature	189	204	-	-
	Pumo4g02732	1126	PRINTS	Disease resistance protein signature	359	373	-	-
	Pumo4g02732	1126	PRINTS	Disease resistance protein signature	941	957	-	-
	Pumo4g02732	1126	Gene3D	-	407	494	IPR036388	-
	Pumo4g02732	1126	Gene3D	-	15	127	-	-
	Pumo4g02732	1126	FunFam	Probable disease resistance protein At1g61300	145	317	-	-
	Pumo4g02732	1126	PANTHER	DISEASE RESISTANCE PROTEIN RP	43	972	IPR044974	GO:0006952
	Pumo4g02732	1126	FunFam	Probable disease resistance protein At1g63360	408	494	-	-
	Pumo4g02732	1126	Gene3D	Ribonuclease Inhibitor	532	916	IPR032675	-
	Pumo4g02732	1126	Gene3D	-	140	316	IPR027417	-
	Pumo4g02732	1126	SUPERFAMILY	L domain-like	900	1051	-	-
	Pumo4g02732	1126	Pfam	NB-ARC domain	182	405	IPR002182	GO:0043531
	Pumo4g02732	1126	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	151	422	IPR027417	-
	Pumo4g02732	1126	Gene3D	-	322	406	IPR042197	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo4g02732	Pumo-Chr4	49543814	49547194	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g02732	186	653	WRKY Transcription Factor Family	AT5G45050	22.411	2.37e-11	66.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo4g02732	-		-	vum:124831962	1248.42