Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo4g02728 | ATGTGGAGATTTAAGCCATTCAGCCACAAAGAGCAGACTGGTCTTGAAGGCCGCACTGTAGATGTTGGCAATCTTAAAATAAATGTCCTTAAGGCCATTGCCGAAGGAGGGTTCTCTTGTGTCTACCTAGCTCGTGATGCTGTACATATGTCAAAGCAATATGCTTTGAAGCACATGATATGCAATGACGAAGAATCACTTGGATTGGTAAAGAAGGAGATATCTGTGATGAAGATGCTGGTAGGACATCCCAATGTTGTCACACTTCATGCACATGCTATCTTTGATATGGGTAGGACAAAAGAGGCATTCCTTGTGATGGAATTTTGTGAAAGGTCTCTGGTTAATGTGCTGGAGAGTCGAGGTACTGGTTATTTTGATGAGAAACAGGTTCTTTTGATCTTCAGGGATGTGTGTAATGCAGTTTTTGCCATGCACTGCCAGTCCCCACCTATTGCACACCGAGACTTGAAAGCAGAGAATCTTTTATTAAGTTCAGATGGGTTATGGAAGTTATGTGATTTTGGAAGCACTTCCACCAATCACAAACGTTTTGAGAAGCCAGAAGAAATGGGGATTGAGGAAGACAATATCAGGAAGTATACAACCCCTGCTTACAGGGCCCCTGAGATGTGGGATCTGTTCTTGAGAGAAGTCATAAATGAGAAGGTAGACATATGGGCTCTTGGGTGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCTTTTGACGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCCGATTTACCACAATACAATTCATCTGTCACGGACTTGATAAGAGACATGCTCCAAGCTAGACCAGATGACAGACCAGATATCACGCAGGTCTGGTTTCGTGTTAATGAACAACTACCTATTAATTTACAGAAGTCATTACCTGACAGACCACCTGAAATGCCCTCATCCAACAATCATGAAGGTGTGTCAATGTCCTCAAACAGATCACCTCCAATGCCTCGTAGGAACCCACCTCCTCCACCTTCATCTGGAGAGCCCAAAACTTCACCACAACCATCCCCTGCTTCTAGGGGAGGGGGAAGTGGGGGGACGCTTGGTGCTTTCTGGTCCACTCAGCATGCAAAGGAATCAGTTGTTGCTGAAGATAAGAGCAAACCAAATTTTGATGAAGAACCATCTGGCCACCATATTTCATCGAAACATGATAGAGTTCGTCCTGGAAACGATCAATTATCCAAAAATGTTGGTCCTAACAAAGTGGTTAACACACAAACTCATGCTGTGAAAACCAGTATACAGGGAAAATCACACAAGCCTGATACTGTTTCCTCCAAGGATTTCGAAATAAATTTGTTTCAAGATAAAGATCGTGTGGGTGAGAGGCAAATATCTAGTATGGAAAATACAACTAACTTTCAAAACCAGGTTTTTAACACTTTTGTTGCTGAGTTCGATACCACTAAGCTCAAACCCGAAAAGGAACAGGCCTTAGAGGCCGAGGTGGAGAAACTCAAAGAGCAGCTGAAGGAAGCTAACTTGGAAAAAGCTGAAATAACGTCAAAGTATGAAAAGCTTTCTGCTATCTGCCGATCACAAAGGCAAGAATTGCAGGATCTCAAGCAAGCACTCGCAGCTAGGACTCCTTCGCCAAGTAGAGAGGGTTTGAAAACCTCTCCTGCAGTTACATCATCTGCATCTGCGAATAAGTCATCATGGCAAGCTTTTCCAGAGGAACCGCAACAACAAAAGTCCCTCTCAGCCGAAAATGCCTCCAAATCTGTCAGGGCAAAAAATGGTCAGCAGAACAAGCAACCTGTTCCACTAGCTACTGATTTTGATTCATGGGGTTTTGGGACAGATAGCTTCAGTGCTGTACCTTCTGGCAGCCCACAGATGCAAAGACCTAGCAGTGCAGGAACCAAGTCTCAGGCTTTTGGTGAGGCAAACAAGTCTGCTTCTCAACCAGCTGGATGGGCTGGTTTTTAA | 1983 | 0.4392 | MWRFKPFSHKEQTGLEGRTVDVGNLKINVLKAIAEGGFSCVYLARDAVHMSKQYALKHMICNDEESLGLVKKEISVMKMLVGHPNVVTLHAHAIFDMGRTKEAFLVMEFCERSLVNVLESRGTGYFDEKQVLLIFRDVCNAVFAMHCQSPPIAHRDLKAENLLLSSDGLWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLREVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPQYNSSVTDLIRDMLQARPDDRPDITQVWFRVNEQLPINLQKSLPDRPPEMPSSNNHEGVSMSSNRSPPMPRRNPPPPPSSGEPKTSPQPSPASRGGGSGGTLGAFWSTQHAKESVVAEDKSKPNFDEEPSGHHISSKHDRVRPGNDQLSKNVGPNKVVNTQTHAVKTSIQGKSHKPDTVSSKDFEINLFQDKDRVGERQISSMENTTNFQNQVFNTFVAEFDTTKLKPEKEQALEAEVEKLKEQLKEANLEKAEITSKYEKLSAICRSQRQELQDLKQALAARTPSPSREGLKTSPAVTSSASANKSSWQAFPEEPQQQKSLSAENASKSVRAKNGQQNKQPVPLATDFDSWGFGTDSFSAVPSGSPQMQRPSSAGTKSQAFGEANKSASQPAGWAGF | 660 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo4g02728 | 660 | SUPERFAMILY | Protein kinase-like (PK-like) | 28 | 344 | IPR011009 | - | |
| Pumo4g02728 | 660 | MobiDBLite | consensus disorder prediction | 301 | 419 | - | - | |
| Pumo4g02728 | 660 | MobiDBLite | consensus disorder prediction | 330 | 347 | - | - | |
| Pumo4g02728 | 660 | MobiDBLite | consensus disorder prediction | 375 | 407 | - | - | |
| Pumo4g02728 | 660 | ProSiteProfiles | Protein kinase domain profile. | 27 | 297 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pumo4g02728 | 660 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 152 | 164 | IPR008271 | GO:0004672|GO:0006468 | |
| Pumo4g02728 | 660 | PANTHER | SERINE/THREONINE PROTEIN KINASE | 1 | 648 | - | - | |
| Pumo4g02728 | 660 | MobiDBLite | consensus disorder prediction | 550 | 607 | - | - | |
| Pumo4g02728 | 660 | MobiDBLite | consensus disorder prediction | 309 | 329 | - | - | |
| Pumo4g02728 | 660 | CDD | STKc_GAK_like | 26 | 298 | - | - | |
| Pumo4g02728 | 660 | Pfam | Protein kinase domain | 29 | 289 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pumo4g02728 | 660 | FunFam | probable serine/threonine-protein kinase DDB_G0280111 | 10 | 305 | - | - | |
| Pumo4g02728 | 660 | MobiDBLite | consensus disorder prediction | 615 | 649 | - | - | |
| Pumo4g02728 | 660 | Gene3D | Transferase(Phosphotransferase) domain 1 | 10 | 306 | - | - | |
| Pumo4g02728 | 660 | MobiDBLite | consensus disorder prediction | 539 | 660 | - | - | |
| Pumo4g02728 | 660 | SMART | serkin_6 | 27 | 291 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pumo4g02728 | 660 | Coils | Coil | 493 | 541 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo4g02728 | Pumo-Chr4 | 49431506 | 49435215 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo4g02728 | 26 | 292 | Miscellaneous Gene Families | AT2G34180 | 28.826 | 3.96e-20 | 92.4 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | NAK | Pumo4g02728 | Pkinase | 3.3e-39 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo4g02728 | K08853 | - | gmx:100808507 | 1149.81 |