Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02726 ATGGCGAGGGAGGTTATGATACCAATAGGGGTAGTTCTTGATTTGAACTCCCCAATTGGAAGCATCTCTAATAGCTGCATATGGATGGCATATCATGATTTCTATAAAGAGCATCCTCGTTTTCAAACTAGACTTGATCTTCGAACAAGAGACTCTAACCGCGATACAGTGACAGCAGCACATGCAGCCTCGGATTTAATAATGAAAGAAAAGGTGAAGGCAATTATTGGACCTCAAACATCAGAGCAAGCAAAGTATGTAATAAGCCTTGGGCGCGAACATCACGTCCCCATTATCTCCTTCTCCGCCACGAGTCCATCTCTTTCCCCAAACCGCACTTCTATTTTCATACGAACGGCACAGGATGATTCCTCTCAGAGCCACACCACCTGCATGAGTTACAAAACATGCCCATTTATAATCTGCACAGTGCTCATCATCACCCAAAGTTACACTGCGAGTTTAGCATCGATGCTAACAATAGAAAGCCTCCAACCAGAATTCATTGACATAGAAGAGATAAAAGGAAATAATTATTTTGTGGGATATCAAAGCCATTCCTTCGTGAAAAACATTTTAATATATCAAATGGGATTCAGTGAGTCCCAGTTGAAGGCATACAATACTCCTGAAGAGTATCATGAAGCACTTTCAAAAGGGAGCAACAATGGCGGGGTAGCGGCTATCTTTGATGAAAGTCCCTACATCAACGTTTTTCTCTCAAAATATGACACTGGATATTCTGTGGTGGGACCGTTTTATAAAACAAATGGAATTGCCTTTGTATTTCCTCTAAAATCGCCTCTTTTGTCATATTTTTCGAGGGCAATCCTTAATGTCATCGAAGATAAAGACAAGTTTGAAGGAATTAAGAACAAGTATTTCTCAACAAAAATTGTCTCAAAAGATCAAAGTGCCTCAATTTTAGACTATCAAAGTCTAACGGTGAATAGCTTTGCAGGTCTTTTCATCGTCACAATGATTGCCTCATTCCTATCATTCTCCTTTTATGTGTTTAGTTTCCTATATTCCCAATGGTCTACTTTGAGAAGCATTCATTATGAACAAACATCCTTTTGGTCATTGATGATTCAAATTGTAAAGCATTTTGATCGAAAAGATAATCCTTTACAACCACCTACAATGAATAGAAAGTCAATCAAGAGTACAACCAATGAGAAGTCTGGAGAGAAATGA 1197 0.3885 MAREVMIPIGVVLDLNSPIGSISNSCIWMAYHDFYKEHPRFQTRLDLRTRDSNRDTVTAAHAASDLIMKEKVKAIIGPQTSEQAKYVISLGREHHVPIISFSATSPSLSPNRTSIFIRTAQDDSSQSHTTCMSYKTCPFIICTVLIITQSYTASLASMLTIESLQPEFIDIEEIKGNNYFVGYQSHSFVKNILIYQMGFSESQLKAYNTPEEYHEALSKGSNNGGVAAIFDESPYINVFLSKYDTGYSVVGPFYKTNGIAFVFPLKSPLLSYFSRAILNVIEDKDKFEGIKNKYFSTKIVSKDQSASILDYQSLTVNSFAGLFIVTMIASFLSFSFYVFSFLYSQWSTLRSIHYEQTSFWSLMIQIVKHFDRKDNPLQPPTMNRKSIKSTTNEKSGEK 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02726 398 Gene3D - 161 301 - -
Pumo4g02726 398 Pfam Ligand-gated ion channel 141 329 IPR001320 GO:0015276|GO:0016020
Pumo4g02726 398 Pfam Receptor family ligand binding region 30 130 IPR001828 -
Pumo4g02726 398 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 143 356 IPR015683 -
Pumo4g02726 398 SUPERFAMILY Periplasmic binding protein-like II 147 298 - -
Pumo4g02726 398 Gene3D - 6 160 - -
Pumo4g02726 398 SMART GluR_14 54 297 IPR001320 GO:0015276|GO:0016020
Pumo4g02726 398 FunFam Glutamate receptor 211 259 - -
Pumo4g02726 398 MobiDBLite consensus disorder prediction 375 398 - -
Pumo4g02726 398 SUPERFAMILY Periplasmic binding protein-like I 7 130 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02726 Pumo-Chr4 49381102 49391319 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02726 148 374 Ion Channels AT2G29110 40.529 3.89e-43 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02726 K05387 - gmx:100799966 341.273