Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02722 ATGATCGTATGGACCGCATTTATTTACAAGATTTGGGATCACAGCTCAGGTGAAACATCGGTTGATTTTTATCATCGATACAAGAGTGACATAAAAGTGGTGAAAGAAATTGGGCTGGATTCCTTTAGATTCTCCATCTCATGGAGCCGCATATTCCCAAAAGGCAAAGGAGCCATTAATCCCTTGGGGGTTAAATTCTACAACAATTTCATCAATGAGATCCTAGCAAATGGTCAATCCTTTCGAATACTCGATTTTTTCTTCCATCAATTCATCAAACTCGCCTTGCTAACTCGTTATTTTGTGGCAGGCTTAAAACCTTTTGTCACCATATTTCATTGGGACTTGCCACAAGCTCTTGAAGATGAGTATGGGGGATTTCGTAGTTCTAAAGTAGTGGCGGATTTTCATAATTACGCTGACTTTTGCTTCAAGACATTTGGGGACCGAGTTAAACATTGGGTGACTTTGAATGAGCCAGGATCATTTGCCCTTGCTGGCTATAGTGCTGGCTATTTTGCACCAGGTAGGTGTTCTAAATACGCTGGAAATTGCACTGTTGGTGACTCAGCCACAGAACCCTACATCGTTGCCCATAATTTAATACTTGCACATGGAACGGCTGCTACATTGTACAAGAAGAAATATGAGGCTTATCAAAAAGGAGAAATTGGAATCACATTAGTGACTCACTTCTTCGAACCAAAATCTAATAGTGATGCCGATCGCAAAGCTGCAACCCGAGCTCTGGAATTCTTTTTAGGGAGCACACATTTTGCAGAATATGCTGCACCAGTCAGCACCAACAGGACCTTCTACACAGACATGCTAGCCTCTATCACTAAAAATGTCATAAATAACATAAGAAAGATGCCGTTTTACAATTGGACTGATTTGAATTGGCTCTTTGTCTATCCGAAGGGACTTCATAATCTTACGGCATACGTAAGGGATACTTACAAGAATCCACCCATTTACATTACTGAAAATGGTGTTGCTGAAATAAGGAATGACTCGATCCCAATCAATCAAGCCCGCAAGGATAGAGATGGTGTTAATGTGAAGGGCTACTATGCATGGTCATTTTCAGACAGCTATGAATGGGATGCTGGTTACACAGTTCGATTTGGCCTCGTGTATGTGGATTTCAAGAACAATTTGAGAAGATATCCCAAGTACTCTGCTTTTTGGCTGAAAAAGTTCCTTCTCAAGTGA 1215 0.4091 MIVWTAFIYKIWDHSSGETSVDFYHRYKSDIKVVKEIGLDSFRFSISWSRIFPKGKGAINPLGVKFYNNFINEILANGQSFRILDFFFHQFIKLALLTRYFVAGLKPFVTIFHWDLPQALEDEYGGFRSSKVVADFHNYADFCFKTFGDRVKHWVTLNEPGSFALAGYSAGYFAPGRCSKYAGNCTVGDSATEPYIVAHNLILAHGTAATLYKKKYEAYQKGEIGITLVTHFFEPKSNSDADRKAATRALEFFLGSTHFAEYAAPVSTNRTFYTDMLASITKNVINNIRKMPFYNWTDLNWLFVYPKGLHNLTAYVRDTYKNPPIYITENGVAEIRNDSIPINQARKDRDGVNVKGYYAWSFSDSYEWDAGYTVRFGLVYVDFKNNLRRYPKYSAFWLKKFLLK 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02722 404 ProSitePatterns Glycosyl hydrolases family 1 active site. 325 333 IPR018120 -
Pumo4g02722 404 Gene3D Glycosidases 258 403 - -
Pumo4g02722 404 SUPERFAMILY (Trans)glycosidases 7 402 IPR017853 -
Pumo4g02722 404 PRINTS Glycosyl hydrolase family 1 signature 351 368 IPR001360 GO:0004553|GO:0005975
Pumo4g02722 404 PRINTS Glycosyl hydrolase family 1 signature 325 333 IPR001360 GO:0004553|GO:0005975
Pumo4g02722 404 PRINTS Glycosyl hydrolase family 1 signature 375 387 IPR001360 GO:0004553|GO:0005975
Pumo4g02722 404 PANTHER GLYCOSYL HYDROLASE 3 78 IPR001360 GO:0004553|GO:0005975
Pumo4g02722 404 Gene3D Glycosidases 2 257 - -
Pumo4g02722 404 Pfam Glycosyl hydrolase family 1 281 401 IPR001360 GO:0004553|GO:0005975
Pumo4g02722 404 Pfam Glycosyl hydrolase family 1 9 78 IPR001360 GO:0004553|GO:0005975
Pumo4g02722 404 Pfam Glycosyl hydrolase family 1 101 255 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02722 Pumo-Chr4 49292313 49300989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02722 10 402 Glycoside Hydrolase AT5G44640 41.357 5.99e-114 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02722 K22279 - gmx:100809047 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02722 4 49292313 49300989 Pumo10g02529 10 43379171 43388287 PCT