Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02695 ATGGCTTCTCTTCACTCTTCTCTGCTCTTGCCACCGAATCTCCTTCCCCTCACTACCCCATCAAGTTCCTCCACTCACATTCTCTTGAACTTGAGACCCTCCACGACCCACCTGCAACCCCTTCTCACCACACGACGCCGTTTTGGGAGAAGACCCTTCGCGGTGGCTGAACAGGCTACCGTGACCGAGGCCGCGAGGAGGCTCTACGTTGGCAACATTCCCCGCACTGTCACCAACGACGAGCTTGCCAAGATTGTTGAAGAGCATGGTGCTGTTGAGAAAGCTGAGGTTATGTATGATAAATACTCTGGAAGGAGCCGTCGCTTTGCATTTGTTACGATGAAAACTGTTGACGATGCAAATGCTGTGATTGAGAAACTTAACGGCACTGAAATTGGAGGGCGTGAGGTCAAAGTAAATATAACTGAAAAACCTTTATCAACACCAGATTTGCCTTTACTCCAAGCCGAGGAATCTGAATTTGTTGACAGTCCCCACAAGGTGTATGTGGGAAATCTGGCCAAGACAGTAACAACTGATATTCTTAAAAACTTTTTTTCTGAGAAGGGAAAAGTTCTTAGTGCCAAGGTTTCACGGGTCCCTGGTACCTCAAAATCCACTGGCTATGGTTTTGTTACTTTTTCATCAGAAGAGGATGTAGAAGCTGCAATTTCATCTTTCAACAATTCTTTGTTAGAAGGGCAAACAATCCGAGTGAACAAGGCATAG 729 0.4636 MASLHSSLLLPPNLLPLTTPSSSSTHILLNLRPSTTHLQPLLTTRRRFGRRPFAVAEQATVTEAARRLYVGNIPRTVTNDELAKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAVIEKLNGTEIGGREVKVNITEKPLSTPDLPLLQAEESEFVDSPHKVYVGNLAKTVTTDILKNFFSEKGKVLSAKVSRVPGTSKSTGYGFVTFSSEEDVEAAISSFNNSLLEGQTIRVNKA 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02695 242 FunFam 30S ribosomal protein 2, chloroplastic 153 242 - -
Pumo4g02695 242 SUPERFAMILY RNA-binding domain, RBD 60 145 IPR035979 GO:0003676
Pumo4g02695 242 SUPERFAMILY RNA-binding domain, RBD 160 242 IPR035979 GO:0003676
Pumo4g02695 242 CDD RRM1_PSRP2_like 67 146 - -
Pumo4g02695 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 144 IPR000504 GO:0003723
Pumo4g02695 242 Gene3D - 51 149 IPR012677 -
Pumo4g02695 242 PANTHER OS02G0815200 PROTEIN 63 241 - -
Pumo4g02695 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 138 IPR000504 GO:0003723
Pumo4g02695 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 238 IPR000504 GO:0003723
Pumo4g02695 242 CDD RRM2_PSRP2 164 242 - -
Pumo4g02695 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 242 IPR000504 GO:0003723
Pumo4g02695 242 SMART rrm1_1 167 240 IPR000504 GO:0003723
Pumo4g02695 242 SMART rrm1_1 67 140 IPR000504 GO:0003723
Pumo4g02695 242 Gene3D - 154 242 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02695 Pumo-Chr4 48485726 48490911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02695 68 242 Eukaryotic Initiation Factors Gene Family AT2G23350 33.146 1.32e-18 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02695 K13126 - gmx:100811197 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02695 4 48485726 48490911 Pumo4g02695 4 48485726 48490911 ECH