Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02680 ATGAGTGTTATGTATAGTCCTGTTCTCAAGTACTCAGATGTGGAGCATCAGCTAAGGAAAAACCAAGAAATGGATTCAAGTATTGGACATCCACAACAACACTGTCACCAACCCAATTCTGGACTATTGAGGAACTGTTCTGCTCCAAGCTCATTACTGGCAAGCCTTATTGACAACACCATTCATGGCTGTGTCAATGAGGAATCATTCACAAGTGAGAATCATCAGCAGCATTATCTTCCATCCACAAGTTCAGAAATGGAGACCATGTTGTCCAAACTGCTACCATCCAACAATGGATGGAGCAATTCAGAACCTTTGCAAGAATTTGGAGGCAAGCCTGTGAAGCAGGAAATAGGGGAATCTGTTCCACAAGGACCACCACAGCAGAATGGTTATTCTTATGGTGGCTCTCAGTTAATTTACCAATCTCAGCAAATTCAAGGCTTGCCAAATGGTTCTTCCAGTGCTGCTGCTGGCAGTGCTTTTGATGTCTCTTTTGGTGTGGTGAACTCCATGGATTCAGAGAACTCCATTCAACCTAAAATGGGTGTCAGGAATTGCTCCAATCTCTTCAGGCAAAAGAGCTCCCCTGCTGGATTTTTCTCCATTGAAAATGATCTTGCAGCATTGAGAGAAGTAGGAAACTGTAAAGCCAATGATGTTTCAAATGGACAGGCTACAGCATCAACTAGTGGGTTGCATAGTTCTCTTACTTTCTCATCTAGGCCATCTTCATGCTTGAAACGGATGCCACAAATAGCGGAAAATGGAAATGAAAGCCTAGAAGAAAATTGTGACCAAAGTAGAAACCTAGTAAATGACAATGGTAGCTCAAAATGTTACATACCTAGCTTCACCAGTGAATTCTGGGACAGTTCTGCATTCAAAACAGAAAATGAAGATGAAATCATGTTTTCCACTTCAAATGGTTTGGAATCTCAGGAAGCAGATTTCAGCTATCAAAATCTTGGTTTGACTCACCATTTGAGTCTACCTAGCTCTTCTACTAAGATGTCTTCCATAGAGAAGTTTCTTCAAATTCAAGGTTCTGTTCCTTGTAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTAAGAAGAACCAGAATTAGTGAAAGAATCAAGAAGTTGGAAGGCCTTTTTCCAAAATCAGAAAAGCAAACAAGCACAGCAGATATGTTAGATTTGGCAGTTGAGTACATTAAGGACCTGCAGCAACAAGTTAAGATACTCTCAGATTGTAAGGCAAAGTGCAAATGTACAAGTAATGAGAAGCATTACACTAGAACCTGTGCCTGA 1323 0.4112 MSVMYSPVLKYSDVEHQLRKNQEMDSSIGHPQQHCHQPNSGLLRNCSAPSSLLASLIDNTIHGCVNEESFTSENHQQHYLPSTSSEMETMLSKLLPSNNGWSNSEPLQEFGGKPVKQEIGESVPQGPPQQNGYSYGGSQLIYQSQQIQGLPNGSSSAAAGSAFDVSFGVVNSMDSENSIQPKMGVRNCSNLFRQKSSPAGFFSIENDLAALREVGNCKANDVSNGQATASTSGLHSSLTFSSRPSSCLKRMPQIAENGNESLEENCDQSRNLVNDNGSSKCYIPSFTSEFWDSSAFKTENEDEIMFSTSNGLESQEADFSYQNLGLTHHLSLPSSSTKMSSIEKFLQIQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLEGLFPKSEKQTSTADMLDLAVEYIKDLQQQVKILSDCKAKCKCTSNEKHYTRTCA 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02680 440 Gene3D - 364 435 IPR036638 GO:0046983
Pumo4g02680 440 SMART finulus 368 418 IPR011598 GO:0046983
Pumo4g02680 440 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 365 428 IPR036638 GO:0046983
Pumo4g02680 440 CDD bHLH_AtbHLH_like 367 420 IPR045239 -
Pumo4g02680 440 FunFam Transcription factor bHLH130 family 363 432 - -
Pumo4g02680 440 Pfam Helix-loop-helix DNA-binding domain 368 413 IPR011598 GO:0046983
Pumo4g02680 440 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 49 427 - -
Pumo4g02680 440 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 362 412 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02680 Pumo-Chr4 47988171 47991317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02680 34 418 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 34.951 2.31e-46 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g02680 HLH 3.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02680 - - gmx:100812802 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02680 4 47988171 47991317 Pumo10g02658 10 49278819 49283130 ECH
Pumo4g02680 4 47988171 47991317 Pumo4g02680 4 47988171 47991317 ECH