Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02679 ATGGACAAGGGGGTGCCACCTAGCCTCTTCGTCAATGATGGTTCTTTCATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGAGAAAGGGAAGAATGTCAAATTAGAGGATTCTAAACCAATTAAGGTTATTTCAGGGTCTTTGTCTCCTAATCCCTCCATTACCAAAACACCTGTGGACTTGAAGGTTAATGATACAAGGAAAACATCCCAGGGTGGTTCCAGCGGCAAGCTAGCTTTCAGTTTAAAACAAAAGTCAAAGCTGGTGCCACCCCCTGTTAAGTTGAGTGCTGATGAGGATGAAGAAGAAACAGAAGCTGGGTATGTTTCAAATGATGCACCACTAAAACGGCAAAAGTTAGGCCAGGAGGAAAGCATTGACCAATCATCAAGACAACTTGATGTTGCACCTTCTTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTAGCAAGTTTTGTGGCTAAAAATGGAAGGCAGTTTGAGGATGTAACACGTCAAAAAAATCCGGGGGATACACCTTTCAAATTTTTATTTGATGAGAGATGTGCTGAATACAAGTATTATGAATATCAGCTTGCTCAAGAAGAAAAGGCTCTTGCACAATCAAGGGAATCACAGGTGCCTCGTAATGGGGGTTCAAGCATTTCATCTTCCAAACAAACTAGTGGTCATCAAAGATCATCTCAGCAGCAGCATACAGCCTACCAAATTCCTGCATCTGCTTTATATGAAAGTGCTGACAATCCAAGAGCTTCTGGATCTTCAATTCATACATCATCAGTAGGAAGCAGTGAAGAGCCCAGTGGTTCATCAAATGCTGATTCTTTGGCACTAATGGAGTTCTACATGAAGAAAGCTGCACGGGAAGAGAAGTATAAACAACCTAAGCACTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCAAGGCAAAAAAGGCCATCACATGGGTGATTTCATTCCTCAAGAAGAACTTGAGAAGTTCTTGGCTACCTGTAATGATGCTGCAGCGCAGAAAGCTGCAAGGGAGGCTGCAGAGAGGGCTAAGATTCAGGCTGATAATGTAGGCCACAGGCTCCTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGTGGATCCAGGAAGGGTATTTCGGATCCTATCATGGCTGGTAATGTTAAGAAGAATAACTTGGGGGTTGGTGCTGAGGAACCTGGGGAGGTGACTGCTGAGGATGACATATACGAGCAGTACAAAAAGCGAATGATGCTTGGCTACCGTTACAGACCTAATCCTCTGAACAATCCCCGCAAGGCTTATTACTGA 1317 0.4419 MDKGVPPSLFVNDGSFMERFKQLQQEQEKGKNVKLEDSKPIKVISGSLSPNPSITKTPVDLKVNDTRKTSQGGSSGKLAFSLKQKSKLVPPPVKLSADEDEEETEAGYVSNDAPLKRQKLGQEESIDQSSRQLDVAPSSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDERCAEYKYYEYQLAQEEKALAQSRESQVPRNGGSSISSSKQTSGHQRSSQQQHTAYQIPASALYESADNPRASGSSIHTSSVGSSEEPSGSSNADSLALMEFYMKKAAREEKYKQPKHSKDEMPPPASLQGKKGHHMGDFIPQEELEKFLATCNDAAAQKAAREAAERAKIQADNVGHRLLSKMGWKEGEGLGGSRKGISDPIMAGNVKKNNLGVGAEEPGEVTAEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02679 438 MobiDBLite consensus disorder prediction 23 38 - -
Pumo4g02679 438 SMART G-patch_5 353 400 IPR000467 GO:0003676
Pumo4g02679 438 MobiDBLite consensus disorder prediction 201 241 - -
Pumo4g02679 438 ProSiteProfiles G-patch domain profile. 355 402 IPR000467 GO:0003676
Pumo4g02679 438 MobiDBLite consensus disorder prediction 201 315 - -
Pumo4g02679 438 MobiDBLite consensus disorder prediction 125 139 - -
Pumo4g02679 438 MobiDBLite consensus disorder prediction 44 81 - -
Pumo4g02679 438 ProSiteProfiles SURP motif repeat profile. 148 191 IPR000061 GO:0003723|GO:0006396
Pumo4g02679 438 MobiDBLite consensus disorder prediction 23 146 - -
Pumo4g02679 438 MobiDBLite consensus disorder prediction 286 303 - -
Pumo4g02679 438 SUPERFAMILY Surp module (SWAP domain) 132 199 IPR035967 GO:0003723|GO:0006396
Pumo4g02679 438 Pfam Surp module 147 196 IPR000061 GO:0003723|GO:0006396
Pumo4g02679 438 Gene3D Surp module 119 205 IPR035967 GO:0003723|GO:0006396
Pumo4g02679 438 SMART surpneu2 146 200 IPR000061 GO:0003723|GO:0006396
Pumo4g02679 438 Pfam G-patch domain 356 400 IPR000467 GO:0003676
Pumo4g02679 438 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 2 438 IPR040169 -
Pumo4g02679 438 MobiDBLite consensus disorder prediction 250 278 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02679 351 411 C2H2 Transcription Factor Family AT5G26610 48.387 4.66e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02679 K13096 - gmx:100786213 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02679 4 47966699 47973463 Pumo4g02679 4 47966699 47973463 ECH