LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g02670	ATGGCTCAGAAAACAGAAAAAGAAGAAACCGAGTTCAAGGTTCCCGAAACGATTACGCTATGCGTTAACAACTGCGGTGTCACCGGGAACCCTGCCACGAATAACATGTGTCAGAAGTGCTTCACCGCGTTCACCGCCACCACGTCCGGCGCCGGAATCTCGCCTCCGGCGACCAGATCCGGCGTCTCCGCGCGTCCTCAGAAGAGATCTTTCCCTGAAGAACCTTCGTCGGCGGCGGATCCTCCGTCTTCGGACCAAACGACGCCGTCGGAGGCGAAGCGCGTGGTGAACCGCTGCTCCGGCTGCCGGCGGAAGGTCGGACTCACCGGATTCCGGTGCCGGTGCGGCGAGCTCTTCTGCGCCGAGCACCGGTACTCCGACCGCCACGACTGCAGCTACGACTACAAAGCCGCCGGAAGAGAAGCCATCGCGAGAGAGAATCCGGTGATCAGAGCCGCGAAGATCGTCAAAGTCTGA	477	0.608	MAQKTEKEETEFKVPETITLCVNNCGVTGNPATNNMCQKCFTAFTATTSGAGISPPATRSGVSARPQKRSFPEEPSSAADPPSSDQTTPSEAKRVVNRCSGCRRKVGLTGFRCRCGELFCAEHRYSDRHDCSYDYKAAGREAIARENPVIRAAKIVKV	158

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo4g02670	158	Gene3D	-	1	66	-	-
	Pumo4g02670	158	SMART	AN1_Zf_4	99	136	IPR000058	GO:0008270
	Pumo4g02670	158	FunFam	Zinc finger A20 and AN1 domain-containing stress-associated protein 1	1	68	-	-
	Pumo4g02670	158	MobiDBLite	consensus disorder prediction	49	65	-	-
	Pumo4g02670	158	FunFam	Zinc finger AN1-type containing 6	73	154	-	-
	Pumo4g02670	158	PANTHER	AN1-TYPE ZINC FINGER PROTEIN	19	157	-	-
	Pumo4g02670	158	MobiDBLite	consensus disorder prediction	77	91	-	-
	Pumo4g02670	158	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	20	66	-	-
	Pumo4g02670	158	MobiDBLite	consensus disorder prediction	49	91	-	-
	Pumo4g02670	158	SUPERFAMILY	AN1-like Zinc finger	83	152	IPR035896	-
	Pumo4g02670	158	Pfam	AN1-like Zinc finger	99	136	IPR000058	GO:0008270
	Pumo4g02670	158	ProSiteProfiles	Zinc finger AN1-type profile.	93	139	IPR000058	GO:0008270
	Pumo4g02670	158	ProSiteProfiles	Zinc finger A20-type profile.	15	49	IPR002653	GO:0003677\|GO:0008270
	Pumo4g02670	158	SMART	A20_3	18	42	IPR002653	GO:0003677\|GO:0008270
	Pumo4g02670	158	Gene3D	-	73	154	IPR035896	-
	Pumo4g02670	158	Pfam	A20-like zinc finger	20	41	IPR002653	GO:0003677\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo4g02670	Pumo-Chr4	47796322	47796798	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g02670	8	158	C2H2 Transcription Factor Family	AT3G52800	38.690	8.34e-34	115

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo4g02670	-		-	gmx:100787293	290.426