Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02654 ATGCAAATTGACGATTATTTTAATTTTTGTAATTTCTTATCTTCTGAATCATGTAGGGTTCTTTGTAAGTTCTTTGCTCATGGAGCCTGTCTGAAAGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGATCCTCCAAATAATATATGCACATTTTATCAGAAAGGAGTCTGTGCTTATGGTAGTCGCTGCAGATATGATCATGTCAAAGCTTCTCAAGAGCAATCTTCCACTCCATCTTCTTCAGTAATCAAACCCCAGACCCTGGTTTCAGATACTGCTGCTTTTGGAAATACTAGAGCTACATCAAATGGTGTTGCTACAGCTGCAGAGTTTTCTCTTTCCAGGAGTCCTTACCTTCTTCCTAGTGAACCGGCTTGGAATCAAGAACTGGCTTGGAATCAAGAACCGGTTTGGAATCAAGAATTTGGGTATCATGAACCTTTAGGGGAGGACAATGTTGGTCAATCCATAATCACTTCACCTTCTGAGCTTTCAATTTGTTCATTTGCTGCTGCTGGAAACTGTCCACGAGGGGAAAAATGCCCTCATATTCATGGGGATCTATGTCCCACCTGTGGAAAGCATTGCTTGCATCCTTTCCGACCTGAAGAAAGAGAAGAACATATGAAGAGTTGTGAAAATAAGCATAAGCATCTTGAGGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTGGAGCGTGTTCTGTCAAAGCCTACAGCAGCTGAACGTAAGTTTGGCCTGCTATCTGAATGTGATCATCCATTTTGCATATCCTGTATTAGGAATTGGCGTAGTAGTAACCCAACATTGGGGATGGATGTTAATAGCACATTGAGGGCATGTCCTATTTGTCGTAAGCTATCGTATTTTGTCATTCCAAGTGTCATTTGGTACTCAACAACTGAAGAAAAACAAGAAATCATTGACAACTACAAGGCAAAGCTCAAGTCAATTGATTGCAAGCACTTTGACTTTGGGGATGGGAACTGCCCTTTTGGCACTAGTTGTTTCTACAAGCATGCATATCGAGATGGCCGTCTGGAGCAGGTAGTTTTGCGACATCTAGGGGCTGCAGATGGTGAGGCCGTAATTGCAAAAGACATCAGGTTGTCGGATTTCCTTTCTAACATGCATTTAAGATGA 1155 0.4165 MQIDDYFNFCNFLSSESCRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGVCAYGSRCRYDHVKASQEQSSTPSSSVIKPQTLVSDTAAFGNTRATSNGVATAAEFSLSRSPYLLPSEPAWNQELAWNQEPVWNQEFGYHEPLGEDNVGQSIITSPSELSICSFAAAGNCPRGEKCPHIHGDLCPTCGKHCLHPFRPEEREEHMKSCENKHKHLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTTEEKQEIIDNYKAKLKSIDCKHFDFGDGNCPFGTSCFYKHAYRDGRLEQVVLRHLGAADGEAVIAKDIRLSDFLSNMHLR 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02654 384 Pfam RNA-binding, Nab2-type zinc finger 323 345 - -
Pumo4g02654 384 Pfam RNA-binding, Nab2-type zinc finger 167 186 - -
Pumo4g02654 384 ProSitePatterns Zinc finger RING-type signature. 255 264 IPR017907 -
Pumo4g02654 384 Coils Coil 210 230 - -
Pumo4g02654 384 ProSiteProfiles Zinc finger RING-type profile. 231 289 IPR001841 -
Pumo4g02654 384 ProSiteProfiles Zinc finger C3H1-type profile. 162 189 IPR000571 GO:0046872
Pumo4g02654 384 SUPERFAMILY CCCH zinc finger 18 41 IPR036855 GO:0046872
Pumo4g02654 384 ProSiteProfiles Zinc finger C3H1-type profile. 44 71 IPR000571 GO:0046872
Pumo4g02654 384 SUPERFAMILY CCCH zinc finger 47 68 IPR036855 GO:0046872
Pumo4g02654 384 SMART c3hfinal6 318 346 IPR000571 GO:0046872
Pumo4g02654 384 SMART c3hfinal6 163 188 IPR000571 GO:0046872
Pumo4g02654 384 SMART c3hfinal6 17 42 IPR000571 GO:0046872
Pumo4g02654 384 SMART c3hfinal6 45 70 IPR000571 GO:0046872
Pumo4g02654 384 CDD RING-HC_MKRN 229 289 - -
Pumo4g02654 384 Pfam Zinc finger, C3HC4 type (RING finger) 231 288 IPR018957 GO:0046872
Pumo4g02654 384 Gene3D - 47 190 - -
Pumo4g02654 384 SUPERFAMILY RING/U-box 221 295 - -
Pumo4g02654 384 Gene3D - 11 46 - -
Pumo4g02654 384 Pfam CCCH-type zinc finger 21 41 IPR041367 -
Pumo4g02654 384 Pfam CCCH-type zinc finger 49 68 IPR041367 -
Pumo4g02654 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 326 IPR013083 -
Pumo4g02654 384 SMART ring_2 231 288 IPR001841 -
Pumo4g02654 384 PANTHER MAKORIN-RELATED 20 367 IPR045072 GO:0000209|GO:0061630
Pumo4g02654 384 ProSiteProfiles Zinc finger C3H1-type profile. 318 347 IPR000571 GO:0046872
Pumo4g02654 384 ProSiteProfiles Zinc finger C3H1-type profile. 16 43 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02654 Pumo-Chr4 47455109 47462798 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo4g02654 zf-C3HC4 3.2e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02654 K15687 - gmx:100787817 727.243