Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02653 ATGTCTAACAGGGTTTGCAAGTTCTATGCCCGCGGAGCATGTTTGAAAGGGGATCAATGTGATTTTTCTCATGAGAAAAAGGATGATATTTGCAGCTATTATCAAAAAGGATTCTGTGCTTATGGTAGTAGATGCAGATATAAGCATGTCAAAGCTTCTCAAGGATCATCTTCAGCAAATGGACGCCATTCTCCTGTTTCGGATTCTATGATGATGTCAAGTTGGGTGCCAAAGGCTGTGAAGTCATCTTCATTGGACAAGCGTGCAAGGAGTTCACAACAAAAGAATCTGGCCTCTCTTGGAAATGATGTTGGTCAATCCAGTACTAGTAGTGCTATACCATCTGAACATTTGTTTTGTGCATTTGCTGCTGCCAACTGCCCCCTTGGAGATAAATGTTCTCGCATTCATGGAAATCAATGCTTATACTGTAGAAAATTTTGCTTACATCCTACTGATCGAAAGGAAAAAGAAAATCATTTGAGGACTTGTGAGAAAAAGGAAAAATACCTTCAGGCTTTGAAAGATAGTCAAGAAGTAGAATGCAATGTTTGTTTGGAGCGTGTTCTGTCCAAACCTAAACCATCTGATTGTAAGTTTGGGCTGCTTCCTGAATGTGACCATGCTTTCTGTTTATCCTGTATCCGCAATTGGCGTAATAGTGCCCCAACCTCTGGAATGGACATCAATAATGCTGGCACTGCTAATACTGTCAGAACCTGTCCTGTTTGTCGCCAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTATTCTACTAAGGAAGAAAAACAGGAAATTATTGACAACTACAAGGCAAACTGCAAACTAATTGATTGCAAGCATTTTAACTCTGGAAATGGGAATTGTCCATTTGGGGCTAGTTGCTTCTACAAGCATACTGTGAAGCCTGGCTCTTACACATGGATACATCACAGGCCACCACCTCAACGTAGACAAAACCGTTTTGATATGTACGACATGTTGGACATGCTCAATGATGTTGACTTATCAAGTGCAGAATATTTTTCCATCATGAGGGACTCTGACTTTTTTGATGATATGGATCCATTCGAGATGATGGAGATATCTGATAGGCTTGCTGGTGAATCAGGTCCTTGTTTGGGACCTTTTGATTCTGATGAGGAGGACATGGATATTTTTCGGATGGCTGCATTATCAGAAGCACTGGTTTCTGGCGTGGACGATTTTGGTCCCGAAGATTTTGATGGAGATTTCAATCCTATGGAGGCTGCCTTATTATCAATGATGATGCATTCTAATATGGAAGATGTAGATGATGATGATGAGGATGAAGAAGAAGAATACAGTGATGAAGACTACTAG 1347 0.4046 MSNRVCKFYARGACLKGDQCDFSHEKKDDICSYYQKGFCAYGSRCRYKHVKASQGSSSANGRHSPVSDSMMMSSWVPKAVKSSSLDKRARSSQQKNLASLGNDVGQSSTSSAIPSEHLFCAFAAANCPLGDKCSRIHGNQCLYCRKFCLHPTDRKEKENHLRTCEKKEKYLQALKDSQEVECNVCLERVLSKPKPSDCKFGLLPECDHAFCLSCIRNWRNSAPTSGMDINNAGTANTVRTCPVCRQLSYFVIPSGIWYSTKEEKQEIIDNYKANCKLIDCKHFNSGNGNCPFGASCFYKHTVKPGSYTWIHHRPPPQRRQNRFDMYDMLDMLNDVDLSSAEYFSIMRDSDFFDDMDPFEMMEISDRLAGESGPCLGPFDSDEEDMDIFRMAALSEALVSGVDDFGPEDFDGDFNPMEAALLSMMMHSNMEDVDDDDEDEEEEYSDEDY 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02653 448 MobiDBLite consensus disorder prediction 430 448 - -
Pumo4g02653 448 ProSiteProfiles Zinc finger C3H1-type profile. 274 303 IPR000571 GO:0046872
Pumo4g02653 448 SMART ring_2 182 244 IPR001841 -
Pumo4g02653 448 Pfam RNA-binding, Nab2-type zinc finger 279 300 - -
Pumo4g02653 448 Pfam RNA-binding, Nab2-type zinc finger 6 24 - -
Pumo4g02653 448 Pfam RNA-binding, Nab2-type zinc finger 120 138 - -
Pumo4g02653 448 ProSitePatterns Zinc finger RING-type signature. 206 215 IPR017907 -
Pumo4g02653 448 MobiDBLite consensus disorder prediction 427 448 - -
Pumo4g02653 448 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 27 50 IPR000571 GO:0046872
Pumo4g02653 448 SMART c3hfinal6 27 51 IPR000571 GO:0046872
Pumo4g02653 448 SMART c3hfinal6 274 302 IPR000571 GO:0046872
Pumo4g02653 448 SMART c3hfinal6 115 139 IPR000571 GO:0046872
Pumo4g02653 448 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Pumo4g02653 448 MobiDBLite consensus disorder prediction 84 104 - -
Pumo4g02653 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 273 IPR013083 -
Pumo4g02653 448 Gene3D - 28 145 - -
Pumo4g02653 448 PANTHER MAKORIN-RELATED 1 330 IPR045072 GO:0000209|GO:0061630
Pumo4g02653 448 Gene3D - 1 27 - -
Pumo4g02653 448 SUPERFAMILY RING/U-box 171 251 - -
Pumo4g02653 448 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Pumo4g02653 448 ProSiteProfiles Zinc finger RING-type profile. 182 245 IPR001841 -
Pumo4g02653 448 ProSiteProfiles Zinc finger C3H1-type profile. 1 24 IPR000571 GO:0046872
Pumo4g02653 448 SUPERFAMILY CCCH zinc finger 24 49 IPR036855 GO:0046872
Pumo4g02653 448 Pfam Zinc finger, C3HC4 type (RING finger) 182 244 IPR018957 GO:0046872
Pumo4g02653 448 ProSiteProfiles Zinc finger C3H1-type profile. 25 52 IPR000571 GO:0046872
Pumo4g02653 448 CDD RING-HC_MKRN 180 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02653 Pumo-Chr4 47425752 47431913 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo4g02653 zf-C3HC4 3.2e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02653 K15687 - gmx:100788886 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02653 4 47425752 47431913 Pumo4g02653 4 47425752 47431913 ECH