Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02649 ATGACAGATCCTAAGTCCAATTTATACAGTGGAGCCTTCAACTTCATGCCCCTCTATTCTCACCACCACTCTTCTTTCACTTCTCAATTAAACCTATTCTCTTCCTACCATCTCAACAACACTTTCACCATTCAATCTGAAACCTCTTCTTCCTCTTGTGCAGCCCCTCCTCCTCCTCCTTCTCCTCCTCTCAGAGAAGCCCTTCCTCTCATAAACAACATAATAAAACAGAAGGAACAAAATGAACCCTCAAACGGCGGCGGCGGCGGCGGCGCGGTCGAAGAGGAAGAAAAAAACAAAAGGGACATGGATGAGAGCCTTTTGAGGACTAGTACTACTGAAGAGGGTGATGATGATGAAACTGTGACAGTGGCACTGCGCATAGGGCTTCCTCCCAGCGTGGCTGCTGATGCTGCTTCTGATCTTGTCGGATCAAGGAAGATCTCAGCTGAAAAGGGGAGTGTGAGTGTGGTTTCTGGACACCCTTTGGATAGATTGAGCAAGGTTCAGTATTGGATCCCCACCCCTTCTCAGATTCTCATTGGTCCTACTCAGTTTTTGTGTTCTGTGTGCTCTAAGAGTTTCAACAGATATAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATATAGAAAGGGCCCTGATTCTCTAAAAGGAACACAACCATCAGCTATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACCCTCCAAACACATTACAAGAGAAAACACGGCATTAAACCCTACATGTGCAGAAAATGTGACAAAACATTTGCAGTGAAAGGTGATTGGAGGACACATGAGAAGAACTGTGGCAAAATTTGGTACTGTTTATGTGGGTCTGATTTTAAACACAAAAGATCTCTAAAAGATCACATAAAGGCCTTTGGCCATGGCCATGGAGCTGTTGACATTGATTGCATGCAAGAAGATGAAGCTGCCTCCGAAATTGAACATGATGGGGATAGCTCAATGTGA 1041 0.4496 MTDPKSNLYSGAFNFMPLYSHHHSSFTSQLNLFSSYHLNNTFTIQSETSSSSCAAPPPPPSPPLREALPLINNIIKQKEQNEPSNGGGGGGAVEEEEKNKRDMDESLLRTSTTEEGDDDETVTVALRIGLPPSVAADAASDLVGSRKISAEKGSVSVVSGHPLDRLSKVQYWIPTPSQILIGPTQFLCSVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCDKTFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGHGHGAVDIDCMQEDEAASEIEHDGDSSM 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02649 346 FunFam Zinc finger protein WIP2 239 321 - -
Pumo4g02649 346 PANTHER ZINC FINGER PROTEIN WIP2 39 339 IPR043584 GO:0003700|GO:0010468
Pumo4g02649 346 SMART c2h2final6 270 290 IPR013087 -
Pumo4g02649 346 SMART c2h2final6 186 208 IPR013087 -
Pumo4g02649 346 SMART c2h2final6 296 319 IPR013087 -
Pumo4g02649 346 ProSitePatterns Zinc finger C2H2 type domain signature. 188 208 IPR013087 -
Pumo4g02649 346 SUPERFAMILY beta-beta-alpha zinc fingers 254 290 IPR036236 -
Pumo4g02649 346 Gene3D Classic Zinc Finger 185 208 - -
Pumo4g02649 346 Pfam C2H2-type zinc finger 186 205 - -
Pumo4g02649 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 186 213 IPR013087 -
Pumo4g02649 346 Gene3D Classic Zinc Finger 239 328 - -
Pumo4g02649 346 MobiDBLite consensus disorder prediction 77 120 - -
Pumo4g02649 346 MobiDBLite consensus disorder prediction 93 120 - -
Pumo4g02649 346 SUPERFAMILY beta-beta-alpha zinc fingers 180 208 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02649 Pumo-Chr4 47376243 47378603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02649 1 339 C2H2 Transcription Factor Family AT3G57670 51.743 2.23e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo4g02649 zf-C2H2_6 2.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02649 - - gmx:100818131 561.992