Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02642 ATGAATGATGGTAGACAAATGGAGATGCACTATATAGACACTGGGTTTCCCTATACTGTTACTGAAAGCTTCATGGATTTCTTCGAAGGCCTCACCACGCACGTGCCTCTCAATTACGCTCATGCTGCCTCAGTGCTTGATCAGGAAAGTGTCTACTGGTCAATGAACATGAACCCATATAAGTTTGGATTGGCTGGCCCTGGGAGTGCATCTTATTATGATTCTTTTTATGAGGTAAATGATCATTTTCCAAGAATGGAGATCAATAGGGGAGACTGGGAATACCCTTCAACAATGACTGTGGATGAACCAGCTACAACTGACTCTCCATCTGGAAGAGATGGAGTCACAAGCATGCAGACCATCCCCGAAGAATGCAATCCAAATCATGAAGAATCCAGTAGTAACCAGGTCATGTGGCAAGACAACGTTGATCCAGATAATATGACATATGAGGAACTACTGGACCTGGGTGAGGCAATGGGAACTCAAAACCGAGGTCTTTCACAAGAACTTATTGATATGCTTCCAACCTCCAAGTACAACTTTGGGAGTTTATTTAAAAGAAAAAATTCCGGGAGAAGGTGTGTGATATGTCAGATGTCATATAGAAGAGGTGACCAACAAATAAAATTGCCATGCAGCCATGTTTACCATGGCGAATGCATTACGAAATGGCTTAAAATTAGCAAGAAGTGCCCAGTTTGTAACATTGAGGTATTTGGGAAAGCAAAAATTGAATCAAAGGCAAAGAGTGTGGAGCGCAGCGACATATGTCGAGACAAGAGGGTGCAAAACAGAGAACGTGCAAGTGCGATGAACACGATGCAATCTTTTGGATCTTCCTTGACTCGCTATTGA 861 0.4262 MNDGRQMEMHYIDTGFPYTVTESFMDFFEGLTTHVPLNYAHAASVLDQESVYWSMNMNPYKFGLAGPGSASYYDSFYEVNDHFPRMEINRGDWEYPSTMTVDEPATTDSPSGRDGVTSMQTIPEECNPNHEESSSNQVMWQDNVDPDNMTYEELLDLGEAMGTQNRGLSQELIDMLPTSKYNFGSLFKRKNSGRRCVICQMSYRRGDQQIKLPCSHVYHGECITKWLKISKKCPVCNIEVFGKAKIESKAKSVERSDICRDKRVQNRERASAMNTMQSFGSSLTRY 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02642 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 241 IPR013083 -
Pumo4g02642 286 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 243 IPR033276 GO:0004842|GO:0016567|GO:0046621
Pumo4g02642 286 SMART ring_2 196 236 IPR001841 -
Pumo4g02642 286 SMART ringv_2 195 237 IPR011016 GO:0008270
Pumo4g02642 286 Pfam Ring finger domain 195 237 IPR001841 -
Pumo4g02642 286 FunFam E3 ubiquitin ligase BIG BROTHER 158 241 - -
Pumo4g02642 286 SUPERFAMILY RING/U-box 195 242 - -
Pumo4g02642 286 ProSiteProfiles Zinc finger RING-type profile. 196 237 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02642 Pumo-Chr4 47185552 47192728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02642 3 246 C3H Transcription Factor Family AT3G63530 54.472 6.96e-96 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02642 K19045 - gmx:100792734 417.927