Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02621 ATGAATGATGGTAGACAAATGGAGATGCATTATATAGACACTGGGTTTCCCTATACTGTTACTGAAAGCTTCATGGATTTCTTCGAAGGCCTCACCACGCACGTGCCTCTCAATTACGCTCATGCTGCCTCAGTGCTTGATCAGATGCTGTCTGTGCAGGAAAGTGTCTACTGGTCAATGAACATGAACCCATATAAGTTTGGATTGGCTGGCCCTGGGAGTGCATCTTATTATGATTCTTTTTATGAGGTAAATGATCATTTTCCAAGAATGGAGATCAATAGGGGAGAGTGGGAATACCCTTCAACAATGACTGTGGATGAACCTGCTACAACTGACTCTCCATCTGGAAGAGATGCAGTCACAAGCATGCAGACCATCCCCGAAGAATGCAGTCCAAATCATCAAGAATCCAGTAGTAGCCAGGTCATGTGGCAAGACAACATTGATCCAGATAATATGACATATGAGGAACTACTGGACCTGGGTGAGGCAATGGGAACTCAAAACCGAGGTCTTTCCCAAGAACTTATTGATATGCTTCCAACCTCCAAGTACAACTTTGGGAGTTTATTCAAAAGAAAAAATTCCGGGAAAAGGTGTGTGATTTGTCAGATGTCATATAGAAGAGGTGACCAACAAATAAAATTGCCATGCAGCCATGTTTACCATGGCGAATGCATTACAAAATGGCTTAACATTAGCAAGAAGTGCCCAGTTTGTAGCATTGAGGTATTTGGTGAGGAATCAACTAATTAG 759 0.4242 MNDGRQMEMHYIDTGFPYTVTESFMDFFEGLTTHVPLNYAHAASVLDQMLSVQESVYWSMNMNPYKFGLAGPGSASYYDSFYEVNDHFPRMEINRGEWEYPSTMTVDEPATTDSPSGRDAVTSMQTIPEECSPNHQESSSSQVMWQDNIDPDNMTYEELLDLGEAMGTQNRGLSQELIDMLPTSKYNFGSLFKRKNSGKRCVICQMSYRRGDQQIKLPCSHVYHGECITKWLNISKKCPVCSIEVFGEESTN 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02621 252 SMART ring_2 201 241 IPR001841 -
Pumo4g02621 252 FunFam E3 ubiquitin ligase BIG BROTHER 163 246 - -
Pumo4g02621 252 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Pumo4g02621 252 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 248 IPR033276 GO:0004842|GO:0016567|GO:0046621
Pumo4g02621 252 SMART ringv_2 200 242 IPR011016 GO:0008270
Pumo4g02621 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 246 IPR013083 -
Pumo4g02621 252 Pfam Ring finger domain 200 241 IPR001841 -
Pumo4g02621 252 SUPERFAMILY RING/U-box 200 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02621 Pumo-Chr4 46541592 46547358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02621 3 250 C3H Transcription Factor Family AT3G63530 53.600 1.30e-93 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02621 K19045 - gmx:100792734 420.239