Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02620 ATGCCTAGAAAAAATAGTCTTAGTGTTGTTGACAAGCATCATGATGAAGTGGAATCTTATATGGAGAAATTAATGAATACTCAAAATTGTTGTGAGTCTCAATCAAATGGTAGCATTGATGCTGAACAAAATGCTGAATCAGGTTCTTTGGAGGCAAGGAAGGTTCGTGGACCTACCTTGTTAAAAGACATATGGAATATGTCTCCGGGAAAGAGAATTGATGTGCAATTTAATAGTCGCAACCAAGCCATAGGAAAGGAGGGTCGGAAGCTTTCTAGTTTTTTGGGCATTTTAGCTAGAAACCCAAGATTAGCTCCTTTAAACATAGAGGATTGGAGACATTTTGATCAAGATCAAAAAAAGAGATTGGTGGAGCTTGTGAGGAGGAAATTCTCAATCTCTGTACGTGGTGAAGAGTTTGTCAAAAAATCAATTGGAAAGAAATGGAAAGATTATAAATGTGAATTAAGGTGTACATATATGACAAAGTACAAGACCAAAGATGCCTTAATGAAAAATAGACCAAAACGTATACCAATGGACCAATGGATCGGTCTTGTTTCTTATTGGCTGTCTGACAAAGCAAAGAAGCGTAGCCAAGCAAATAGATGCAATAGAACAAAGCAAAAGATGTCTCACACTGGTGGATCTAAAAGCATTGGAACTTTAATGGCTGAAAAGGTCAAAGATGGGATAGAACCTACTAGGGCAGAAATTTTCATACTAACTCATAAGAAGCGTAAAGATGGAAGACCATTGGATGAGGAGTCTGCAAAAATAGTGGATATGATTCAAATAAAGTTGAACAATGGTGAAACATGTAATGAACAACCCACCGGTAGTGTTGCTTGGAAAGGAGATGTATACTCCCAAGTATTGGGAGAAGAAAGAAGTGGCTATGTTCGTGGCTTGGGACTTGGTCCAACTCCTTCTCAATTATGGGGTACTAAATCTAATATTCTTTCTAGTAACATGACTAATGAGGTAGTACAAATGTTGGAGCAAGAATTGAGGGAGTTAAAGAAGTCAAAGGAGAAACATGATGAAGAAATGGATTTGATGAAACAAAATCAAGACAAGTTAGTATCGGAGTTATCTTTCATGAGAAAAGTGTTAAATAAATATTTTCCTAAGGAGTTATCTATGGCTCAAAACTTTGGAAGCTCATTTGGACAGGTCCATGATACTAATAGTGGTTTTGAACAAGCACATTATGTTGAAAAGAAAATTCCAACTCCTCAAGGTAATATGTTCAAGCCAAGTGGTTCAATCAAGCCTGAGGACCAGGCTTCTGATTTTGATGTGCTTCTTACTGGTGCTAATGAGACCTTCCATTCATTCAAGGGTCTGAACGAAGGTGATGAAAGATGGCATTATAATTCTGATAATCCAGAGTCTAGTACCTATGCTGCTGAATTAGCACTTGAAGCTTTGGCTGGAGTGATCTCTTTAGCATCTTCTGAAACTGATATTAAGTATGATGAGATCAATGGTATCATGAAAGATTTTGATGAACTTGACCATCTTGCTTCTACTGGCCTCCACCTTGGGGACACCAAATGCATGGTAATCCAAGAAGAGCCAGAAGCCATCATTTGTGAAAAGAAGAATGTGGACCCTAAAACTGGAAAAGGGAAGAAAATTACTGTTTCGGTTGATGATGGTATCGGGACAAACACAAATTTAGCAGATTTTGGGGACACCAAATGCATGGTAATCCACAAAGAGCCAAAAGTTGTCATCCGAGGGAAGAAGAATGTGGACCCTAAAACTGAAAAAAGGAAGAAAAGTACTGCTTCTGTTGATGATATCACTTCCTTGCTAAAGCTTGTGAGAAAAGATAATGATGATGCTGTTCGGAAACTAGCAGCAGAGGCACTTGCTAGTCTTGCCACAGATGTCTTTCTTGTTTCTTACCAGCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATTAAAGCGATGCTTTTGGATTCAGCAGGCTTCCATGGAATGATGTGTTTGGAATGCTTGATAAATGCTTCCCCCTTATAG 2037 0.3864 MPRKNSLSVVDKHHDEVESYMEKLMNTQNCCESQSNGSIDAEQNAESGSLEARKVRGPTLLKDIWNMSPGKRIDVQFNSRNQAIGKEGRKLSSFLGILARNPRLAPLNIEDWRHFDQDQKKRLVELVRRKFSISVRGEEFVKKSIGKKWKDYKCELRCTYMTKYKTKDALMKNRPKRIPMDQWIGLVSYWLSDKAKKRSQANRCNRTKQKMSHTGGSKSIGTLMAEKVKDGIEPTRAEIFILTHKKRKDGRPLDEESAKIVDMIQIKLNNGETCNEQPTGSVAWKGDVYSQVLGEERSGYVRGLGLGPTPSQLWGTKSNILSSNMTNEVVQMLEQELRELKKSKEKHDEEMDLMKQNQDKLVSELSFMRKVLNKYFPKELSMAQNFGSSFGQVHDTNSGFEQAHYVEKKIPTPQGNMFKPSGSIKPEDQASDFDVLLTGANETFHSFKGLNEGDERWHYNSDNPESSTYAAELALEALAGVISLASSETDIKYDEINGIMKDFDELDHLASTGLHLGDTKCMVIQEEPEAIICEKKNVDPKTGKGKKITVSVDDGIGTNTNLADFGDTKCMVIHKEPKVVIRGKKNVDPKTEKRKKSTASVDDITSLLKLVRKDNDDAVRKLAAEALASLATDVFLVSYQQCREGQDVLPEQIKAMLLDSAGFHGMMCLECLINASPL 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02620 678 Pfam Plant transposase (Ptta/En/Spm family) 180 310 IPR004252 -
Pumo4g02620 678 PRINTS Profilin signature 513 527 IPR005455 GO:0003779
Pumo4g02620 678 PRINTS Profilin signature 489 509 IPR005455 GO:0003779
Pumo4g02620 678 Pfam Profilin 482 536 IPR005455 GO:0003779
Pumo4g02620 678 MobiDBLite consensus disorder prediction 31 45 - -
Pumo4g02620 678 SUPERFAMILY Profilin (actin-binding protein) 465 537 IPR036140 -
Pumo4g02620 678 MobiDBLite consensus disorder prediction 31 51 - -
Pumo4g02620 678 Coils Coil 323 364 - -
Pumo4g02620 678 Gene3D Dynein light chain 2a, cytoplasmic 465 545 - -
Pumo4g02620 678 PANTHER OS10G0409366 PROTEIN-RELATED 12 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02620 Pumo-Chr4 46529887 46537460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02620 492 536 Cytoskeleton Gene Families AT4G29340 57.778 9.12e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02620 - - gmx:100795315 525.398