Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02581 ATGGATGAATACCACTGTAGTGCGTACCCACACATCTCTGCGTCCGATTTTGCGTCGGAAATTCTATCCTGCCCCGATGATCAACACTTCAGTGTAGAGGTTGAATACACGAACATGTACGTTTTGAATGCCAGCGAATTCGAAACCTTTAGCAACACTACTCGTCACAGGTTTGCAAACATCTCAAAGGATGAAATAATGCAAGAAAGGACAATCGTGTCTTGGCTTTCCAACATGGGTGTGCCTAGCGACGCTCATAGGTCTGTGGTGGCAAAGGTATTGCAATGTGCGCGTGGCATGGCTAATGATAGGATCCCCACGGAGGTTCTATCTATGCGCGTGGAAGTGACTATCACTCGGGCCAGTGAAGATGATGATGATGATGATTTTGAAGAAGAAGAAATAGAGGATGAAGAAGATCATGGGTTGGTGCCAGCGGCAAAGTCACTTGTTGAGGGATTGGAGACGGTTGAAGAAAAAGGGTCCAAAAGGTGTGCGATTTGTCTGGAAGATTTTCTTGTTGGTGTTCGCATGCCTTGTTTGCACATGTTTCATAAAAACTGCATCGGTGATTGGTTGCAAATAGACAATTCTTGCCCTTTGTGTCGGTTTCAGATGCCTAGTCATCAAAGCGGTTGA 639 0.4554 MDEYHCSAYPHISASDFASEILSCPDDQHFSVEVEYTNMYVLNASEFETFSNTTRHRFANISKDEIMQERTIVSWLSNMGVPSDAHRSVVAKVLQCARGMANDRIPTEVLSMRVEVTITRASEDDDDDDFEEEEIEDEEDHGLVPAAKSLVEGLETVEEKGSKRCAICLEDFLVGVRMPCLHMFHKNCIGDWLQIDNSCPLCRFQMPSHQSG 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02581 212 Pfam Ring finger domain 164 203 IPR001841 -
Pumo4g02581 212 ProSiteProfiles Zinc finger RING-type profile. 165 203 IPR001841 -
Pumo4g02581 212 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 120 207 - -
Pumo4g02581 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 211 IPR013083 -
Pumo4g02581 212 SMART ring_2 165 202 IPR001841 -
Pumo4g02581 212 SUPERFAMILY RING/U-box 164 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02581 Pumo-Chr4 45136624 45137407 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02581 141 208 C3H Transcription Factor Family AT3G02340 41.558 1.60e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02581 - - pvu:PHAVU_005G024400g 224.942