Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02566 ATGTCTAACTTCATCTGCTCCGGAGCTAACCGAAGCATGTGCGGTGGTCCAGAGAAATCAAAATCTCTTTCAACTCCATCTTCATCTGCTGTAGAAGGTTCAACTAACGCCAAAGACATGAAAAATTTAACAGTTCATACTGAAGATTCTTTTTCCTGCTTACTTGAGCTTGCTTCTAACAATGATTTTGAAGATTTTAAGCTAGCTTTAGATAGGGATGTTTCTCTAATAAATGAAGTTGGCCTCTGGTATGTCCGTCAGATTGGATCCAAACAAATTGTTCTTGAGCACCGAACTCCTTTAATGGTTGCTGCTATGTATGGGAGTATAGATGTTCTAAAACTCATACTCTCATGTCCGGAGGTTGATGTCAATTTCTCCTGTGGGACAGATAAAAGCACTGCCCTTCACTGTGCTGCATTGGGTGGTTCTGTTAATGCGGCTGATGTTGTCAAATTGCTCTTACTGGCCGGTGCTGATATCAGTTGTGTGGATGCTAATGGAAATCGTCCTGTTGATGTTATTGTTGTTCCTCCTAAGCTCGAAGGTCTGAAAGCAATGCTTGAAGATCTACTTTCGGATGCTCCTTCTGATGGGTCTGTTGGTGACTGTTTTATTCCAGTTTCAGTTAATTCATCATGTTCTGATTCAGCTGCTCATTTATCATCACCTGAAAATGGGTTGCCATCCTCTCCAATGGCATCGAAGTTTACTGATACAGCTGTTAATTCTGCTTCCGAGAAGAAAGAATATCCAATTGATCCATCACTTCCTGATATAAAGAACAGCATTTATGCGACAGATGAGTTTCGCATGTTTTCTTTCAAGGTGCGACCTTGTTCCCGGGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCGGGAGAGAATGCTCGAAGGAGGGACCCCAGAAAGTTCCACTACAGCTGCGTGCCATGCCCTGATTTTAGAAAGGGGGCTTGTAGACGTGGGGACATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCAGCTCAATATCGGACAAGGCTGTGCAAAGATGGCACTAGTTGCAATAGAAGGGTATGTTTTTTTGCTCACACAGCAGAAGAGCTGCGTCCATTGTATGTGTCCACTGGATCTGCTGTTCCCTCACCTCGTTCATCTGCCTCTACTCCGAATGTCATGGACATGGCTGCTGCAATGAGCCTCTTTCCTGGCTCACCGTCATCAATTTCTTCCATGTCTCCATCTCCCTTTGCGCAGCCAATGTCTCCATCAACAAGTGGCATTTCTCACTCATCTAATGCTTGGCCACAGCCAAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGCCGATTGAGATCTTCTCTTAATGCTCGTGACATGCCTCGTGAAGACTTGGATGTGTTGCAAGATTTTGATGGCCAGCAACACCTTTTGAATGACTTGGGCTGTTTCTCGCAGCCCCGTCCTGGTGCCATTTCAGTGAGTCGATCTGGTCGGTCCAAGACACTAACTCCATCAAATCTTGATGATCTATTTTCTGCTGAGATTTCTTCATCTCCTCGGTATTCTGACCCAGCAGCGGCTTCTGTATTTTCCCCAACACACAAATCGGCCATTATGAATCAGTTTCAACAGCTTCAAAGTTCGTTATCTCCCATAAATACAAGTGTCTCGTCTCCTAGGAACGTTGAGCATCCTCTATTGCAGGCTTCATTTGGCGTCTCTTCTCCTGGAAGGATGTCACCAAGAAGTATGGAACCAATCTCTCCAATGAGTTCTCGATTATCAGCATTTGCACTGCGTGAGAAACAGCACCAACAGCTGCGAAGCCTTAGTTCAAGGAACCTTGGTGCCAATGTTCCTGTCTCAATGGTTGGGTCCCCAGTTAACTCCTGGTCTAATTGGGGCTCTCCCCATGGGAATGGAAAAGTAGACTGGTCAGTAAATGGAAATGAGCTAGGTCGATTGCAAAGATCATCCTCATTTGAGCTTGGAAACAACAATGGGGAGGAGCCTGATCTATCCTGGGTTCAATCCCTTGTCAAGGAATCTCCATCCGAGATAAAAGAGAAGTTGGCAGGTTCTGGCCCTGTTGCATCTGCTGATGGACCAAATTCCAATCCTCAAGTTGAGCCTACTGATCATTCTGTTCTAGGAGCCTGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAA 2214 0.4508 MSNFICSGANRSMCGGPEKSKSLSTPSSSAVEGSTNAKDMKNLTVHTEDSFSCLLELASNNDFEDFKLALDRDVSLINEVGLWYVRQIGSKQIVLEHRTPLMVAAMYGSIDVLKLILSCPEVDVNFSCGTDKSTALHCAALGGSVNAADVVKLLLLAGADISCVDANGNRPVDVIVVPPKLEGLKAMLEDLLSDAPSDGSVGDCFIPVSVNSSCSDSAAHLSSPENGLPSSPMASKFTDTAVNSASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASTPNVMDMAAAMSLFPGSPSSISSMSPSPFAQPMSPSTSGISHSSNAWPQPNVPALHLPGSNIQTSRLRSSLNARDMPREDLDVLQDFDGQQHLLNDLGCFSQPRPGAISVSRSGRSKTLTPSNLDDLFSAEISSSPRYSDPAAASVFSPTHKSAIMNQFQQLQSSLSPINTSVSSPRNVEHPLLQASFGVSSPGRMSPRSMEPISPMSSRLSAFALREKQHQQLRSLSSRNLGANVPVSMVGSPVNSWSNWGSPHGNGKVDWSVNGNELGRLQRSSSFELGNNNGEEPDLSWVQSLVKESPSEIKEKLAGSGPVASADGPNSNPQVEPTDHSVLGAWLEQMQLDQLVV 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02566 737 SMART c3hfinal6 344 367 IPR000571 GO:0046872
Pumo4g02566 737 SMART c3hfinal6 309 335 IPR000571 GO:0046872
Pumo4g02566 737 MobiDBLite consensus disorder prediction 691 721 - -
Pumo4g02566 737 PANTHER UNKEMPT FAMILY MEMBER 56 689 IPR045234 -
Pumo4g02566 737 Gene3D - 17 225 IPR036770 -
Pumo4g02566 737 ProSiteProfiles Ankyrin repeat profile. 131 166 IPR002110 GO:0005515
Pumo4g02566 737 ProSiteProfiles Ankyrin repeat region circular profile. 131 165 - -
Pumo4g02566 737 MobiDBLite consensus disorder prediction 14 35 - -
Pumo4g02566 737 SUPERFAMILY Ankyrin repeat 43 177 IPR036770 -
Pumo4g02566 737 MobiDBLite consensus disorder prediction 17 35 - -
Pumo4g02566 737 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 314 334 IPR000571 GO:0046872
Pumo4g02566 737 SMART ANK_2a 96 126 IPR002110 GO:0005515
Pumo4g02566 737 SMART ANK_2a 131 163 IPR002110 GO:0005515
Pumo4g02566 737 FunFam Zinc finger CCCH domain-containing protein 66 267 335 - -
Pumo4g02566 737 ProSiteProfiles Zinc finger C3H1-type profile. 314 336 IPR000571 GO:0046872
Pumo4g02566 737 Pfam Ankyrin repeats (3 copies) 86 163 IPR002110 GO:0005515
Pumo4g02566 737 Gene3D - 309 372 - -
Pumo4g02566 737 MobiDBLite consensus disorder prediction 411 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02566 Pumo-Chr4 44717584 44721401 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02566 13 734 C2H2 Transcription Factor Family AT5G12850 55.047 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo4g02566 Ank_2 1.2e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02566 - - gmx:100792574 1340.48