Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02547 ATGGTCTCCCATTCCTTGCAAAATGCACCCCTTGTCATCCATCCCTTGCAGATGAGTGTCCCCACCAATGGTCGTTCTGGAAACTTCAAACAATTCAACTGCCCAAAAGGCTACTACAATGATCTTGCTACTCTTCTTCTGACCACCAATGATGATGCTGTTAGAAACATATTCTCAACCAACACTCCTCTTGAATACCAACCCTCCTCCATCATAATTTTCTTTGCACTCTATTGCATACTAGGACTAATCACCTTTGGAATTGCTGTGCCATCAGGGCTCTTCCTCCCCATCATTCTCATGGGTTCCGGTTACGGCCGCCTTCTCGGCATCCTCATGGGACCTCACACAAACATTGATCAAGGGCTGTTTGCAGTCCTTGGTGCAGCCTCACTCATGGCTGGATCTATGAGAATGACTGTGTCCCTTTGTGTGATCTTCCTTGAACTAACCAACAACCTTCTCCTACTACCAATAACCATGATTGTTCTCCTCATAGCTAAAACTGTTGGAGACAGCTTCAACCCAAGCATCTATGAGATCATACTGCACTTGAAAGGTCTCCCTTTCATGGATGCAAACCCTGAGCCATGGATGAGAAACCTCACTGTGGGAGAGCTTATTGATGTGAAGCCAGCAGTGGTTAGCTTCAGAGGAGTAGAGAAGGTAGCCAATATAGTCAATGCCTTGAAAAACACTACACATAATGGTTTTCCTGTCATGGATTGTGGGGTGGTGCCAACAACAGGAGTGGCCAATGAGGCAACAGAACTGCATGGAATCATTCTAAGAGCACACCTTATCCAAGTGCTAAAGAAGAGGTGGTTCTTGAAGGAGAGAAGGAGAACTGAGGAGTGGGAAGTGAGAGAGAAATTTACTTGGGTAGAGCTGGCTGAGAGAAAAGGGAATATTGAAGATGTGGCTGTAACTAAAGATGAAATGGAGATGTTTGTTGATCTACATCCTCTCACCAATACAACACCCTTCACAGTGCTAGAGAGTATCTCAGTAGCAAAAGCAATGGTTCTCTTCAGACAAGTTGGACTTCGCCATATGCTTGTTGTGCCAAAGTATCAAGCATCTGGGGTATCTCCTGTGATTGGGATCTTGACCAGGCAGGATCTCCTGGCATACAACATTCTGACAGTGTTTCCTCACCTGGCAAAATCAAAGAGGAAGTGA 1182 0.4535 MVSHSLQNAPLVIHPLQMSVPTNGRSGNFKQFNCPKGYYNDLATLLLTTNDDAVRNIFSTNTPLEYQPSSIIIFFALYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGILMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELIDVKPAVVSFRGVEKVANIVNALKNTTHNGFPVMDCGVVPTTGVANEATELHGIILRAHLIQVLKKRWFLKERRRTEEWEVREKFTWVELAERKGNIEDVAVTKDEMEMFVDLHPLTNTTPFTVLESISVAKAMVLFRQVGLRHMLVVPKYQASGVSPVIGILTRQDLLAYNILTVFPHLAKSKRK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02547 393 CDD CBS_pair_voltage-gated_CLC_euk_bac 211 378 - -
Pumo4g02547 393 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 18 381 - -
Pumo4g02547 393 Pfam CBS domain 326 378 IPR000644 -
Pumo4g02547 393 SUPERFAMILY CBS-domain pair 195 378 IPR046342 -
Pumo4g02547 393 PRINTS Chloride channel signature 122 138 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo4g02547 393 PRINTS Chloride channel signature 178 192 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo4g02547 393 PRINTS Chloride channel signature 90 110 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo4g02547 393 PRINTS Chloride channel signature 140 159 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo4g02547 393 Pfam Voltage gated chloride channel 46 171 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo4g02547 393 Gene3D - 194 383 IPR046342 -
Pumo4g02547 393 SMART cbs_1 213 272 IPR000644 -
Pumo4g02547 393 SMART cbs_1 327 380 IPR000644 -
Pumo4g02547 393 Gene3D Clc chloride channel 33 193 - -
Pumo4g02547 393 ProSiteProfiles CBS domain profile. 324 390 IPR000644 -
Pumo4g02547 393 SUPERFAMILY Clc chloride channel 45 193 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02547 Pumo-Chr4 43677370 43679066 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02547 20 391 Ion Channels AT3G27170 79.301 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02547 K05016 - gmx:778094 701.434