Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02546 ATGAGTGTTGTTCCAATGAGTGAGGAATCTAGTTTGCTTAAAGAAAGCACATCAACCAATGACACCATGGTGGAAGAGGTTGAAGAAAGAGATCCAGAAAGCAATCCACTGAATGAGCCACTTCTCAAGAGGAACAGGACTTTGTCATCCAATCCACTTGCTCTTGTTGGAGCAAAAGTTTCCTACATAGAAAGCTTGGACTATGAGATCAATGAGAATGACCTGTTCAAACAAGATTGGAGGAGCAGATCAAGAACTCAAGTGTTGCAGTACATATTCTGGAAGTGGACTCTGGCATTCCTTGTTGGACTTCTCACTGGTGTCATAGCCACTCTTATCAATCTTGCTATTGAGAACATTGCAGGCTACAAGCTTCTTGCTGTTGTCAATTTTATCCAAAAAGAAAGGTACTTGACGGGTTTCCTATATTTCACGGGCATTAATTTCCTTTTGACATTTGTTGCTGCTATTCTGTGTGTGTGTTTTGCACCCACAGCTGCTGGGCCTGGAATACCAGAAATCAAAGCTTATCTTAATGGGGTTGATACTCCCAACATGTATGGTGCCACAACATTGTTTGTTAAGATAATTGGAAGCATTGGAGCTGTAGCTGCAGGCCTAGATTTAGGGAAAGAAGGGCCATTGGTACACATTGGAAGCTGCATTGCTTCCTTGCTAGGCCAAGGAGGCCCTGACAATTACAGGATCAAGTGGCGCTGGATTCGGTATTTCAACAACGATCGTGACCGTCGTGATCTTATCACCTGTGGTGCTTCTTCAGGGGTTTGTGCAGCTTTCAGGGCACCTGTGGGAGGAGTTCTGTTTGCTCTTGAAGAGGTGGCAACTTGGTGGAGAAGTGCTCTCCTCTGGAGAACATTTTTCAGCACTGCTGTGGTAGGTGGTAGTGCTAAGGGCCACTATCGAGCTTTGCCACAAAGGCAAGTGTGGTCTTTTTGGTGA 960 0.449 MSVVPMSEESSLLKESTSTNDTMVEEVEERDPESNPLNEPLLKRNRTLSSNPLALVGAKVSYIESLDYEINENDLFKQDWRSRSRTQVLQYIFWKWTLAFLVGLLTGVIATLINLAIENIAGYKLLAVVNFIQKERYLTGFLYFTGINFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLFVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWIRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVGGSAKGHYRALPQRQVWSFW 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02546 319 PRINTS Chloride channel signature 259 278 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo4g02546 319 PRINTS Chloride channel signature 195 214 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo4g02546 319 PRINTS Chloride channel signature 164 181 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo4g02546 319 PRINTS Plant CLC chloride channel signature 294 304 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo4g02546 319 PRINTS Plant CLC chloride channel signature 280 288 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo4g02546 319 PRINTS Plant CLC chloride channel signature 69 77 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo4g02546 319 MobiDBLite consensus disorder prediction 1 20 - -
Pumo4g02546 319 MobiDBLite consensus disorder prediction 21 37 - -
Pumo4g02546 319 Gene3D Clc chloride channel 87 306 - -
Pumo4g02546 319 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 14 300 - -
Pumo4g02546 319 Pfam Voltage gated chloride channel 152 299 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo4g02546 319 SUPERFAMILY Clc chloride channel 73 300 IPR014743 -
Pumo4g02546 319 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02546 Pumo-Chr4 43673696 43676445 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02546 28 299 Ion Channels AT3G27170 83.088 4.58e-166 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02546 K05016 - gmx:778094 572.007