Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02542 ATGGAGGAAGCGAAGGAAAAGAGTTGGAGAATGGAAGTGGAGGAGAAGCTGAAGAGGCTGCAATCTCTTCTCTTCGGTGCAGAGCGCGCTCTCGAAAACAACGACTTCTCCTCCGCTTACGTCCTCGCGCTTCGTCTCCTCGGATTCCTCGACGCACACTCCTCCGACGTCGACGAAGCCTTCGTCCAACCGATTCGCCGCGACGCTCTCGCCAAACTCCACTTCGCTCGCCAATCCCTCACTCCTCAATCTGATCGCCAAGCGTTTGAGCAAGCAAAGAAATCTCCAGGATGCATTTTTGGCACAACAGGAGATATTGACATTGAGAAGATTCAGAATTCAAAGTACTTTCGAGCTCTTGTCAAGCAATCTAAAGAAAAAGATGAGAATCAATTGGTTGATCACCTGGGGAAACAGGACAAAGCAGGCAGCAAAGCCTCAAAGCAAATGGTGCAAACTAAGTTACCATCCATGTATGGGAAAAGCAGCTTGAGGACTAGCAACGGTTTCAAGAGTTTTTTGAGCATGAAAAATAATAGCTCTGAGGACTGCATGATTCTTGATAGGCCTCAATCTCACGCTAGCCATACAAAGGGTCCTGGTGTCTCTTCCATCTTGCAAGTTGAAGGAGAAGAAAGAGCTTTTGGAAACACATTCTCCACAAAACGTGTACACATGGAAAACAATAGCCCCAGAGTTGGATATGTGAAGTCACCTTCAAGTAAGGAGGAAGTTAACCCTGATGTTTGTGGCAACGGGTTTGTTACTGCTAGAGCAAAACTGGAAATGGAAGCAAAGCAGAAGCGAGGAGTAGGTGGTTCACCCAGTGCCTCTGTCTCACCACAATGTGATAACAATTCTGCCAACAGGTTGTATGGTGGAAGATCATATGGTGTTTCACGACGTGGTGTCCGTGGTAATTTTGTTCCCCCTATTAAATCCAATGGGAACAATGCTGGAAATATGAGCGCACGCATTGCTGGAAAATGTGATGATTCTTTAGATGACTCTACAAAGAAATGTCTGGAAATCCTGTGTGGTCCTGATGGTGAGCTTCCTGAGAAATTGAGGAATTTGGAACCTCGCCTCATTGAACATGTTAGTAATGAGATTATGGATAGAGATCCCAATGTCCGGTGGGATGATATTGCTGGATTGGAGCGTGCCAAGAAATGTGTTGATGAGATGGTCATATATCCTCTGCAACGTCCTGACATATTCCAGGGCTGTCGTTCCCCCGGGAGGGGTCTGCTTCTGTTTGGTCCACCAGGAACTGGTAAAACAATGATAGGAAAAGCCATAGCAGGGGAGGCTAAGGCAACCTTCTTTTACATATCTGCAAGTTCGTTGACTAGCAAGTGGATTGGTGAAGGTGAAAAGCTAGTAAGAGCACTTTTTGGAGTTGCCAGTTGTCGTCAACCAGCAGTAATTTTTGTTGATGAAATAGATTCGCTCCTGTCTCAGCGTAAATCAGACGGTGAACATGAATCAAGTAGACGGCTAAAGACGCAGTTTCTCATTGAAATGGAAGGCTTTGACAGTGGTAGCGAGCAAATTCTGCTTATAGGAGCAACAAATCGTCCCCAAGAGCTTGATGAAGCAGCACGAAGGAGACTGAGTAAAAGACTTTATATTCCCCTACCATCCTCAGAGGCAAGAGCTTGGATTGTACGTAACCTTCTAGAGAAAGATGGATTATTCAAGCTATCAAGCGAGGAAATGGATATCATATGCAAATTAACGGAAGGTTATTCAGGATCAGACATGAAAAACTTAGTGAAGGATGCTTCTATGGGACCCTTAAGAGAGGCCTTAAGTCAAGGCATAGAAATTACAAAGTTGAAAAAGGAGGATATGCGACCCGTGACTCTTCAGGACTTCGAGAATTCCCTCCAAGAGGTGAGGCCTTCTGTTTCCCCAAATGAACTTGGCACTTATGAACAATGGAACAAGCAATTTGGAAGCCTATCACTGTAG 1977 0.4522 MEEAKEKSWRMEVEEKLKRLQSLLFGAERALENNDFSSAYVLALRLLGFLDAHSSDVDEAFVQPIRRDALAKLHFARQSLTPQSDRQAFEQAKKSPGCIFGTTGDIDIEKIQNSKYFRALVKQSKEKDENQLVDHLGKQDKAGSKASKQMVQTKLPSMYGKSSLRTSNGFKSFLSMKNNSSEDCMILDRPQSHASHTKGPGVSSILQVEGEERAFGNTFSTKRVHMENNSPRVGYVKSPSSKEEVNPDVCGNGFVTARAKLEMEAKQKRGVGGSPSASVSPQCDNNSANRLYGGRSYGVSRRGVRGNFVPPIKSNGNNAGNMSARIAGKCDDSLDDSTKKCLEILCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPNVRWDDIAGLERAKKCVDEMVIYPLQRPDIFQGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLSKRLYIPLPSSEARAWIVRNLLEKDGLFKLSSEEMDIICKLTEGYSGSDMKNLVKDASMGPLREALSQGIEITKLKKEDMRPVTLQDFENSLQEVRPSVSPNELGTYEQWNKQFGSLSL 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02542 658 PANTHER AAA DOMAIN-CONTAINING 154 655 - -
Pumo4g02542 658 SMART AAA_5 413 549 IPR003593 GO:0016887
Pumo4g02542 658 Gene3D - 376 650 IPR027417 -
Pumo4g02542 658 ProSitePatterns AAA-protein family signature. 519 538 IPR003960 GO:0005524|GO:0016887
Pumo4g02542 658 Pfam ATPase family associated with various cellular activities (AAA) 417 547 IPR003959 GO:0005524|GO:0016887
Pumo4g02542 658 MobiDBLite consensus disorder prediction 273 287 - -
Pumo4g02542 658 FunFam Fidgetin-like 1 376 558 - -
Pumo4g02542 658 FunFam Fidgetin like 1 548 634 - -
Pumo4g02542 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 653 IPR027417 -
Pumo4g02542 658 MobiDBLite consensus disorder prediction 268 287 - -
Pumo4g02542 658 Gene3D - 548 634 - -
Pumo4g02542 658 Pfam Vps4 C terminal oligomerisation domain 620 654 IPR015415 -
Pumo4g02542 658 Coils Coil 10 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02542 Pumo-Chr4 43560893 43568128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02542 332 656 Calmodulin-binding Proteins AT3G56690 30.357 9.61e-40 155