Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02540 ATGCAGATCTTCGTAAAAACCCTTACGGGGAAGACCATAACCCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAAGCCAAGATTCAAGACAAGGAAGGCGCTGCCCTTAAGATCGCCTTCCCTATTTCACAATGGAAGCGTTTCGAGTCATAG 159 0.4906 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGAALKIAFPISQWKRFES 52
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02540 52 FunFam Ubiquitin-like protein 1 30 - -
Pumo4g02540 52 Pfam Ubiquitin family 3 37 IPR000626 GO:0005515
Pumo4g02540 52 Gene3D - 1 50 - -
Pumo4g02540 52 PRINTS Ubiquitin signature 32 52 IPR019956 -
Pumo4g02540 52 PRINTS Ubiquitin signature 11 31 IPR019956 -
Pumo4g02540 52 SUPERFAMILY Ubiquitin-like 1 38 IPR029071 -
Pumo4g02540 52 PANTHER UBIQUITIN 1 36 - -
Pumo4g02540 52 ProSiteProfiles Ubiquitin domain profile. 1 35 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02540 Pumo-Chr4 43508377 43508991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02540 1 35 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 5.98e-19 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02540 - K08770 sot:102586619 71.6329