Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02526 ATGGCGAAGAAGCGAAAACAGCCACCTCAGCCCGCTCAATCCGAAGAACCCCCTCTCAAGCAACAACCCCAATTCGATGCAGCAGCAGCAGCAGCAGCAGAGTACAAAGAAGAGGAACATTACGAAGAAGAAGAAAAAGAAGAAAGCGAAGAACAACAAGAAGAAAAAGAACCAAAGAGTGAAACACCGAAGAAGGCTCCTTCCATTTCATCATCATCCCCTAACGACGATGACAACGACGAACCCATCCAGAACCTTCTAGAACCCCTCGGCAAGGACGAGATCGCCAGATTCCTTATCGAGGCCGCCTCCAGGCACGGCGACGTGGCGGAGCGGATCCGCCTCGCCGCCGACGCTGACCCGGCGCACCGCAAGATCTTCGTCCATGGCCTCGGCTGGGACGCCACCGCCGACACCCTCGCCGCCGCCTTCAGCCCCTACGGCGACATCGAGGACTGCAAGGCCGTCGCCGATAAGGCCACCGGCAAGTCCAAGGGCTACGGCTTCGTCCTCTTCAAGACCCGCCGCGGCGCCCGCAACGCCCTCCGCCAGCCGCAGAAAAAGATCGGCAACCGCACCACGGCCTGCCAGCTGGCGGCGGTGGGCCCGGTCCAGCCGACGCCGTCGCCGCATGCTGCGGCGACCGCGTCGACTGGGCCGGAATTCATGCAGAGGAAGATATACGTGAGCAATGTGGGTGCGGAATTGGACCCGCAGAGGCTCTTGACGTTTTTTGCGCGGTTTGGGGAGATTGAGGAAGGGCCTTTAGGGCTTGATAAGGTCACTGGGAAACCGAAAGGGTTCTGTTTGTTTGTTTATAAGAGTGTGGAGGGTGCGAGGAGGGCGTTGGAAGTGCCGCATAAGAAGTTCGAGGGGCATATTTTGCATTGCCAGAAGGCAATTGATGGTAACAAACAACAGAGAGTGGTGGGGGCAGTGCAGGGTAGTTCTCTGAGTGGTGGATTTGTTGGTGGTGGTGCGGCGGTGGCGCCGGGGCATTTGATGGCTCCGGCTGGGCCAGTGGTTGGAGGAGTTTCTGTGGGGGCGGCGGTGAATCCGGTGATTGGGCAGGCCGCGCTGACGGCGCTGCTGGCGTCTCGCGGGGCCGGGTTGCAGTTGAATGGGTTGTTGGGGATAGGGTCACCGGCAGCGGCGATGGTGAGCCCTGGCGGCTATGGTCGACAGGGGAGTGGGAATTCAGGTGGTGTTGGTGTTGGGGGGTATGGGAATCAAGTAGGGTTGCAGAGTGCATATGCAAGCCAGCAGCTGGTGGGGATAGGTGGATCTGGAAGAGTGCAACAGCAGCAGCAGCAACAGCAGCATGGTGTTGGACAGTATGGTGGGGTTGTGCCTTACATGGGTCATTAG 1368 0.5928 MAKKRKQPPQPAQSEEPPLKQQPQFDAAAAAAAEYKEEEHYEEEEKEESEEQQEEKEPKSETPKKAPSISSSSPNDDDNDEPIQNLLEPLGKDEIARFLIEAASRHGDVAERIRLAADADPAHRKIFVHGLGWDATADTLAAAFSPYGDIEDCKAVADKATGKSKGYGFVLFKTRRGARNALRQPQKKIGNRTTACQLAAVGPVQPTPSPHAAATASTGPEFMQRKIYVSNVGAELDPQRLLTFFARFGEIEEGPLGLDKVTGKPKGFCLFVYKSVEGARRALEVPHKKFEGHILHCQKAIDGNKQQRVVGAVQGSSLSGGFVGGGAAVAPGHLMAPAGPVVGGVSVGAAVNPVIGQAALTALLASRGAGLQLNGLLGIGSPAAAMVSPGGYGRQGSGNSGGVGVGGYGNQVGLQSAYASQQLVGIGGSGRVQQQQQQQQHGVGQYGGVVPYMGH 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02526 455 MobiDBLite consensus disorder prediction 1 85 - -
Pumo4g02526 455 SUPERFAMILY RNA-binding domain, RBD 224 321 IPR035979 GO:0003676
Pumo4g02526 455 Gene3D - 26 205 IPR012677 -
Pumo4g02526 455 Gene3D - 206 317 IPR012677 -
Pumo4g02526 455 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 39 302 - -
Pumo4g02526 455 SUPERFAMILY RNA-binding domain, RBD 118 200 IPR035979 GO:0003676
Pumo4g02526 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 314 IPR000504 GO:0003723
Pumo4g02526 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 295 IPR000504 GO:0003723
Pumo4g02526 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 193 IPR000504 GO:0003723
Pumo4g02526 455 Coils Coil 32 57 - -
Pumo4g02526 455 SMART rrm1_1 125 197 IPR000504 GO:0003723
Pumo4g02526 455 SMART rrm1_1 226 298 IPR000504 GO:0003723
Pumo4g02526 455 MobiDBLite consensus disorder prediction 64 80 - -
Pumo4g02526 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 201 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02526 Pumo-Chr4 42253074 42257733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02526 212 300 C2H2 Transcription Factor Family AT2G19380 35.955 9.95e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02526 K12741 - qsu:112025393 427.557