Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02525 ATGGGATCTCAAGGTGGGGCAGTGCAACAGCCAAAGACTACTACCCCTTTGGCTAGGCAAGGGTCCTTGTATAATCTGACCCTTGATGAGGTGCATAACCAGCTTGGGAATTTGGGGAAGCCACTTGGCAGCATGAATCTTGATGAGCTGCTGAAGAGTGTGTGGAGTGCTGAAGCTGGTGGTGAGGCCTCTGGCTTGGACTTTGGTGTTGGTGGTGATGCTGACATGCAGCATGGCCAGGCTGCTGCTTCTGGCTCCTCTCTGAATCCTCAGGGGAGCCTAACTTTGTCTAGGGATCTTAGCAGGAAAACTGTTGATGAGGTGTGGAGAGATATGCTACTGAAGAAGGGCACTAATAGGGACAAAAAAACCCAGGAAAGACAGCCTGCACTGGGTGAGATGACTCTGGAGGACTTCTTGGTGAAGGCTGGAGTGGTTGCTGAAGCTTTGCCTACCAAGGGTGCTGGGGCTATGTCAGGGGTTGATTCAAATGGGGCTTCCTCTCAACATGGCCATTGGATGCAATACCAGCTCCCTTCTTCAGTGCAGCAGCAGCAGAATATGATGGGGGGTTATGTGGCTGGCCATGCCATTCAGCAGCCTTTCCAGGTTGCGGTGAATCTAGTTTTGGATGCAGCATACTCCGAGCCGCCTTGTTCTTTAATGGGCGCGTTATCGGATACACAAACTCCTGGTCGAAAAAGGGTTGCCTCTGGTGATGTGGTGGAGAAAACTGTGGAGAGGAGGCAGAAGAGGATGATTAAAAATAGGGAATCTGCTGCTCGGTCGCGGGCAAGAAAACAGGCATACACACAAGAGCTGGAGATTAAGATTTCACTATTAGAAGAGGAGAATGAAAATCTTAGAAGACTGAATGAGATGGAGAGGGCATTGCCATCTGTGCCACCACCTGAGCCTAAGCCTAAGCCTAAGCATCAGCTTCGCAGAACTAGTTCAGCCATCTTTTGA 969 0.5036 MGSQGGAVQQPKTTTPLARQGSLYNLTLDEVHNQLGNLGKPLGSMNLDELLKSVWSAEAGGEASGLDFGVGGDADMQHGQAAASGSSLNPQGSLTLSRDLSRKTVDEVWRDMLLKKGTNRDKKTQERQPALGEMTLEDFLVKAGVVAEALPTKGAGAMSGVDSNGASSQHGHWMQYQLPSSVQQQQNMMGGYVAGHAIQQPFQVAVNLVLDAAYSEPPCSLMGALSDTQTPGRKRVASGDVVEKTVERRQKRMIKNRESAARSRARKQAYTQELEIKISLLEEENENLRRLNEMERALPSVPPPEPKPKPKHQLRRTSSAIF 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02525 322 Pfam bZIP transcription factor 248 290 IPR004827 GO:0003700|GO:0006355
Pumo4g02525 322 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 246 298 - -
Pumo4g02525 322 SUPERFAMILY Leucine zipper domain 248 294 IPR046347 GO:0003700|GO:0006355
Pumo4g02525 322 CDD bZIP_plant_BZIP46 248 294 - -
Pumo4g02525 322 SMART brlzneu 244 316 IPR004827 GO:0003700|GO:0006355
Pumo4g02525 322 MobiDBLite consensus disorder prediction 295 322 - -
Pumo4g02525 322 Gene3D - 246 298 - -
Pumo4g02525 322 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 251 266 IPR004827 GO:0003700|GO:0006355
Pumo4g02525 322 Coils Coil 267 298 - -
Pumo4g02525 322 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 246 290 IPR004827 GO:0003700|GO:0006355
Pumo4g02525 322 MobiDBLite consensus disorder prediction 80 99 - -
Pumo4g02525 322 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 17 320 IPR043452 GO:0003700|GO:0045893
Pumo4g02525 322 MobiDBLite consensus disorder prediction 77 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02525 Pumo-Chr4 42222889 42227405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02525 1 322 bZIP Transcription Factor Family AT3G56850 56.364 1.08e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo4g02525 bZIP_1 2.8e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02525 K14432 - gmx:100170741 495.738