Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02518 ATGGATCACTACATGGTTCTCGGCCTGCACCGAACCGCGACCAAGGACGAAATCAAAGCAGCACTCAAGAAACTAGCGTTCCAGTTCCACCCGGACAAGCATTCCCAATCGCCGAAGGCCGTTAGGGAAAACGCCACAATTCGATTCAAACAGGTCTCCGAGGCCTACGAGATTCTGATGGACGATCGCAAGCGCGCCGACTACAATTTCCTGCGGAGCTCCGGCGCCGGCGCCGGAAACAACTACTATTCTCAGTATAGCTACGGATACGGTAGGAGTGGGAACAGTTATTACGAGTATAAACCTAGGTCTGGTGGTGGTGGTGGTGGTGGTGGCGGCTTCGCGTCCAAGTTTGAACTCGCGCTTCGGATTTTGACCGCGCGGTCTTCGCTTCTCAGTCTCGGCTTCGCAGCAGCTATATTAGGTGGGATAGTTGTCATTGATTCAAGTGGAGAATCTTTATGGAGAATGCAAAATTCTGGGAAATCTTTTGAAGAAGCCATGAAGTCCATTGAGAAGGCCAAAGCATATAGAGAAGATAACATGAAGGAACGACCTTGA 561 0.5062 MDHYMVLGLHRTATKDEIKAALKKLAFQFHPDKHSQSPKAVRENATIRFKQVSEAYEILMDDRKRADYNFLRSSGAGAGNNYYSQYSYGYGRSGNSYYEYKPRSGGGGGGGGGFASKFELALRILTARSSLLSLGFAAAILGGIVVIDSSGESLWRMQNSGKSFEEAMKSIEKAKAYREDNMKERP 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02518 186 Gene3D DnaJ domain 1 91 IPR036869 -
Pumo4g02518 186 CDD DnaJ 2 61 IPR001623 -
Pumo4g02518 186 PRINTS DnaJ domain signature 22 37 IPR001623 -
Pumo4g02518 186 PRINTS DnaJ domain signature 4 22 IPR001623 -
Pumo4g02518 186 PRINTS DnaJ domain signature 44 64 IPR001623 -
Pumo4g02518 186 SMART dnaj_3 1 64 IPR001623 -
Pumo4g02518 186 PANTHER CO-CHAPERONE PROTEIN DJLA 4 106 - -
Pumo4g02518 186 SUPERFAMILY Chaperone J-domain 1 96 IPR036869 -
Pumo4g02518 186 ProSitePatterns Nt-dnaJ domain signature. 49 68 IPR018253 -
Pumo4g02518 186 FunFam DnaJ domain protein 1 90 - -
Pumo4g02518 186 Pfam DnaJ domain 2 69 IPR001623 -
Pumo4g02518 186 ProSiteProfiles dnaJ domain profile. 2 72 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02518 Pumo-Chr4 41924607 41928477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02518 3 73 C2H2 Transcription Factor Family AT1G74250 39.437 5.85e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02518 - - gmx:100782769 302.753