Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02505 ATGGGGAGCAGAAAGGAAGATGAGAGGAACGAGAAAATTATCAGAGGTCTCATGAAGCTTCCGCCGAATCGAAGATGTATCAACTGCAACAGCTTGGGACCACAATATGTATGTACGAGTTTTTGGACTTTCATTTGTATGACATGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTGTCAATGGCAAAGTTCACTTCACAAGAAGTTGATGCTCTTCAAAATGGAGGTAACCAGCGTGCAAGGGAAATATATTTGAAAAATTGGGACTTCCAGAGGCAGCGATTGCCAGATAACAGCGATGTTGATAAAATAAGGGAATTTATAAGGAGTGTATATGTGGATGGAAGATATGCTGGAGTGAAGTCTTCAGAAAAGCCTCCAAGAGATGCGCAGAGCCCTGGAATTCATGAAGACGAGATTAGGCGGGCCAGTTCTTATCATTCATATTCTCAAAGTCCTCCATATGATTATCAATATGAAGATCGACGGTATGGAAAACAGGCAGCTGCACTGACCAGGAAGCCTGGTTCAGATAAAGCTCGCTATGAAGGGAAGATGTCTAGTATTATCTACAGTCCTGGCCGCTTCAGTGATCATGCATATGATGACAGATTTGCAAATGAGGGATCTGGTCCAAGAATTTCTGACTTTTCTGTGTCTAGTGGTGGCGAACAATTCAAATCCGATGTTCAGTCTCCAAATTTTCACAAAGATATCAAGACTACCAGCAGTCCATCCTATCAGCGGCGTTCTGGTTCCAGTTCAAGTGAAGATGTGTGGTCCCAAGCAAGAAATGCATCTCTGGAAACTAATGCCAATGCCAAGAGAGATGCAGATAGAATTCGTCCTCTGCAGAGAACTGCGTCAGCACAATCAACAGACAACAAACTTTCATCCTTGAGATCTTATAATTCTGGCAGTTTAGTTAATTTTTTCTCAGAATCAGTCCAACCTTCAGAACCACTTCAGAATAAAGCATTTGGCATTCCACGACCACCTGGTCCTACAAGATCTGTTAGCATGGACTTTTCCAAGGCACCATTGGAATCAGCTTCATCTGTTGATCTTTTTCAGTTTCAGTTACCAGCAGCACCATCTCAAGCTCCAACAGTGGATCTGTTTCAATCATCTGTTTCATCTGCAGCTCCAACAGTGGATCTATTTCAATCATCTGTTTCATCTGCAGCTCCATCTTTCAATGAGAATCAACTTACTCAAACATCTCAGATTGCATCTATTGACTTTTTTGCCGATTTTTCTCAGCAGCCTTCTACTGTAACCTCAGATGAGAAGGCACTGGAGTTATCTGTCCCTAAAAATGAAGGATGGGCAACTTTTGATATGCCTCAGAGCACCTCCTCTACTGCACAAGTGGAAATTCCAGCCACTGTACCCTCAAGTGCTAAATCTTTACAAGAAACATTTGATCCATTTTCAACCTCAAATGCAAACACGCAATGGCCATCTTTTGAAATTTCTAGTGTCAGTGTACCTTCTTCAGTTACATCTAATTTATGGCATGATGGTTTGTGGAATGGAGAAGAACAAGTTTCTGCTATGGCAGCAAACCCTCAACCATGGAATGCATTTGAAGATTCTGGTGGCCATCATCCGGTGAATGCCCTTAGTCAAGGATTACAATTGCACAATTTTCCATCAGCTGATAATCAAATTTTGGGTTTAAGAGAGTCCGAGGGATCCAATAAAGATGGAGTTAAAGGCATTGCCCCTGTTAGTGGGTTTGATAATCATGACATCCCATCACATGTCAGTGGCTCAGCGTATCCCCCACCCACGCTTCCTCCAATGGGAGATATTCAACCTAATGGAATGAAATCTAAATCAACTAATCCATTTGATTATCCCTTTGAATCTGATGTAGATCACAACAATATGTTTCTTGGTATGAACTCTTTGCAAGCTGCACTGCCAGATGCCCTGTTTCCAGCCACCTTCCATGGTGGTATAAGTGAATCTTGGCTTCCTCAAAACACGGTGGTTTGTCATTCATGGCTGTGCAATCACCAAGTTCTCAAATACAGAACATCCAGGCACCGGAACCAGTTGCTTCGTTTGGGGGAAATCCTTTTGCATAGGATTATGCTGTAG 2121 0.4239 MGSRKEDERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTSFWTFICMTCSGIHREFTHRVKSVSMAKFTSQEVDALQNGGNQRAREIYLKNWDFQRQRLPDNSDVDKIREFIRSVYVDGRYAGVKSSEKPPRDAQSPGIHEDEIRRASSYHSYSQSPPYDYQYEDRRYGKQAAALTRKPGSDKARYEGKMSSIIYSPGRFSDHAYDDRFANEGSGPRISDFSVSSGGEQFKSDVQSPNFHKDIKTTSSPSYQRRSGSSSSEDVWSQARNASLETNANAKRDADRIRPLQRTASAQSTDNKLSSLRSYNSGSLVNFFSESVQPSEPLQNKAFGIPRPPGPTRSVSMDFSKAPLESASSVDLFQFQLPAAPSQAPTVDLFQSSVSSAAPTVDLFQSSVSSAAPSFNENQLTQTSQIASIDFFADFSQQPSTVTSDEKALELSVPKNEGWATFDMPQSTSSTAQVEIPATVPSSAKSLQETFDPFSTSNANTQWPSFEISSVSVPSSVTSNLWHDGLWNGEEQVSAMAANPQPWNAFEDSGGHHPVNALSQGLQLHNFPSADNQILGLRESEGSNKDGVKGIAPVSGFDNHDIPSHVSGSAYPPPTLPPMGDIQPNGMKSKSTNPFDYPFESDVDHNNMFLGMNSLQAALPDALFPATFHGGISESWLPQNTVVCHSWLCNHQVLKYRTSRHRNQLLRLGEILLHRIML 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02505 706 MobiDBLite consensus disorder prediction 134 148 - -
Pumo4g02505 706 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Pumo4g02505 706 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Pumo4g02505 706 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Pumo4g02505 706 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Pumo4g02505 706 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Pumo4g02505 706 SUPERFAMILY ArfGap/RecO-like zinc finger 9 122 IPR037278 -
Pumo4g02505 706 MobiDBLite consensus disorder prediction 289 303 - -
Pumo4g02505 706 CDD ArfGap_AGFG 11 121 - -
Pumo4g02505 706 MobiDBLite consensus disorder prediction 123 161 - -
Pumo4g02505 706 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Pumo4g02505 706 MobiDBLite consensus disorder prediction 217 276 - -
Pumo4g02505 706 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Pumo4g02505 706 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Pumo4g02505 706 PANTHER ARFGAP/RECO-RELATED 1 673 IPR044820 GO:0005096
Pumo4g02505 706 MobiDBLite consensus disorder prediction 206 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02505 Pumo-Chr4 41469622 41477085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02505 14 137 C2H2 Transcription Factor Family AT3G07940 31.343 1.01e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02505 K15044 - gmx:100788316 1125.54