Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02503 ATGACAATGAATAACTCAATACACTTCAAGAATGGTGGTTGTGGGTTCCCTTCACCAGCTCCTGTTCCTGGTCTCCAGTGTTCAAACACTTTTGTGGTGATGGGTCATGCTGGAGGCACAGAATCTGAAAGTTCTGATATGCCCCTTCAGATTTTGAACCCCTCAATGTCCCAACCCCAGGAGGAGGATGAAGAAGAGTGTTTTGGGGTTGAGAACATGAGCTTGTCTTTGAAACCTGGTGAGGAAGTTGAGGCTAATAGTTCTTCTGGCACAGGGAAAGTTAGGCACACTAAGCTTTGTGCTAGAGGACATTGGAGGCAAGCTGAAGATGCCAAACTTAAAGATCTTGTCGCCCAATTTGGACCTCAAAATTGGAACTCAATCGCAGAACATCTTCAAGGAAGATCAGGCAAGAGTTGTAGATTGAGGTGGTTTAATCAGCTAGATCCAAGAATTAACCGAAAGGCCTTCAGTGAGGAAGAAGAGGAGAGACTCTTGGGTGCTCACAGAGTGTACGGTAACAAATGGGCCATGATTTCTAGACTCTTCCCTGGTAGGACAGATAATGCAGTGAAGAACCATTATCATGTGATCATGGCTAGGAGGCAAAGGGAGAAGTCATGTGTCTATAGAAGGAGAAAGCCCACAACATTTCAGACCCTCCCAAAGGATTTGAACGCAGGCAGTGAATCAACCATCTCAAGCACCATCATTGATGAATCTGCCTCAACAGGCACTAACCTCTCCCTCACACACTCTTCAGCCAAACCAACTACTCCTATGCCTTTTCACAACCCTTGTCCTGTTCAGAATCACCAAGCCTTTGGTGCACTAAAGGGTTTATCTGGAGAAAGCAGGACACCAGGCAGGGATGTGGGTTTTGACAAGTTTTTTGGTGCTTGGAAAGGTTCATGTGAGGCTGGGCACATGGGAATGGGTGTAGACCAATCCCATTATTCAGATTCAAACTCATCAGAAGTTTCAGTATCTGAGTCAGTTGCCACCAACAGGACTACCAATCTCTCAATTTCTGGGGAAAGTGAAAACGTGGGTAATAACAAGGCCAACATTTCATTCATTGACTTTCTTGGAGTAGGAGCTACATAA 1107 0.4526 MTMNNSIHFKNGGCGFPSPAPVPGLQCSNTFVVMGHAGGTESESSDMPLQILNPSMSQPQEEDEEECFGVENMSLSLKPGEEVEANSSSGTGKVRHTKLCARGHWRQAEDAKLKDLVAQFGPQNWNSIAEHLQGRSGKSCRLRWFNQLDPRINRKAFSEEEEERLLGAHRVYGNKWAMISRLFPGRTDNAVKNHYHVIMARRQREKSCVYRRRKPTTFQTLPKDLNAGSESTISSTIIDESASTGTNLSLTHSSAKPTTPMPFHNPCPVQNHQAFGALKGLSGESRTPGRDVGFDKFFGAWKGSCEAGHMGMGVDQSHYSDSNSSEVSVSESVATNRTTNLSISGESENVGNNKANISFIDFLGVGAT 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02503 368 Gene3D - 102 153 - -
Pumo4g02503 368 SMART sant 153 201 IPR001005 -
Pumo4g02503 368 SMART sant 101 150 IPR001005 -
Pumo4g02503 368 SUPERFAMILY Homeodomain-like 102 195 IPR009057 -
Pumo4g02503 368 FunFam MYB transcription factor 102 153 - -
Pumo4g02503 368 PANTHER MYB PROTEIN-RELATED 102 274 - -
Pumo4g02503 368 Gene3D - 155 215 - -
Pumo4g02503 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 153 203 IPR017930 -
Pumo4g02503 368 CDD SANT 105 146 IPR001005 -
Pumo4g02503 368 ProSiteProfiles Myb-like domain profile. 102 148 IPR001005 -
Pumo4g02503 368 ProSiteProfiles Myb-like domain profile. 149 199 IPR001005 -
Pumo4g02503 368 Pfam Myb-like DNA-binding domain 105 165 - -
Pumo4g02503 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 152 IPR017930 -
Pumo4g02503 368 CDD SANT 156 196 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02503 Pumo-Chr4 41185161 41187435 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02503 97 236 MYB Transcription Factor Family AT5G17800 70.714 7.90e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo4g02503 Myb_DNA-bind_6 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02503 K09422 - gmx:100791795 364.385