Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02500 ATGGTGAGGCCTCCTTGCTGTGAAAAACTAGGCATCAAGAAGGGTCCTTGGACACCAGAGGAGGATATCATCCTTGTCTCTTACATCCAAGAACATGGCCCAGGAAATTGGAGATCAGTGCCAACTAATACTGAGTTGTCAAGGTGCAGCAAAAGTTGCAGACTTAGATGGACTAACTACCTCAGGCCAGGAATCAAAAGAGGGAGCTTCACTAGTCACGAGGAAGGCATGATAATTCATTTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCCTACCTTCCACAAAGAACAGACAATGATATAAAGAATTATTGGAACACTCATCTAAAGAAGAAGTTGAAGAATTTTCAAGCAGTGCTGGACCCCCACCAGCTGGCATCAGACTCAACAGCAACCACTACTGGTCACTATGTATCCAAGATTTCTAGTGACAGAAGAAATTTAGATATCAATAGCAACCATGCCTCATCTTCCACCTATGCCTCAAGCACAGAGAACATCTCAAGACTCTTAGAAGGGTGGATGAGATCTTCTCCAACATCCAAAGGAGCCCAAAACAAAGAGCATCAAAGTAATGATAATTTTGAGTCTGCATCTGTGCCTTCTTTAAACATAGAGTGCTGCTCCTACCAAACCAAAGATCAGAAAATAGTTCCCCATGAAGAATTTGATTATATTTTGTCGTTTGAAAACCTAAACAGTGCTGCTTGGGACAAGTCCACTTGTGAAAAAAATTCTGAAGATGGTGCTAGTGAAAAGGTTCATGCTATGGCAGAGAGAAATAGGGAAAGATCTGAGAACAATAATGCTCCTCCATTGTCATTTCTTGAGAAGTGGTTGTTGGATGAAAATGTTGGTCACGTAGAGGAGATGATGGAATTGTCTCCTACTCCTATGTTTGGGATATGA 918 0.4194 MVRPPCCEKLGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTELSRCSKSCRLRWTNYLRPGIKRGSFTSHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKNFQAVLDPHQLASDSTATTTGHYVSKISSDRRNLDINSNHASSSTYASSTENISRLLEGWMRSSPTSKGAQNKEHQSNDNFESASVPSLNIECCSYQTKDQKIVPHEEFDYILSFENLNSAAWDKSTCEKNSEDGASEKVHAMAERNRERSENNNAPPLSFLEKWLLDENVGHVEEMMELSPTPMFGI 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02500 305 MobiDBLite consensus disorder prediction 180 200 - -
Pumo4g02500 305 CDD SANT 69 112 IPR001005 -
Pumo4g02500 305 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo4g02500 305 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo4g02500 305 CDD SANT 16 61 IPR001005 -
Pumo4g02500 305 Gene3D - 69 135 - -
Pumo4g02500 305 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo4g02500 305 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo4g02500 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pumo4g02500 305 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo4g02500 305 FunFam MYB-related transcription factor 13 66 - -
Pumo4g02500 305 SMART sant 13 63 IPR001005 -
Pumo4g02500 305 SMART sant 66 114 IPR001005 -
Pumo4g02500 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pumo4g02500 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 224 - -
Pumo4g02500 305 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02500 Pumo-Chr4 40959301 40960979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02500 1 158 MYB Transcription Factor Family AT5G62470 70.625 6.45e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo4g02500 Myb_DNA-binding 9.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02500 K09422 - gmx:100817854 404.06