Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02493 ATGAGTAGTGAAGGGGACATGTCTAATAAGGATCCGGGTATTAGGCTCTTTGGCAGGAAGATTCCGTTGCCGGAATGTCAGATTCCGAATGCTTGCAGTGACTTAAAGAAAACAGAAATTGAAATGCCTTGTGCTGAAAACTCTGAGCAACCAGAGAATTCTTCTGATTTAAGGGATAGCAAACAAGAGTCCCTACATAACGTACAGGAAAATGGGTCAAAAGTAAATGCCAAGCCTGTGGAAGATAATATGGAGAGTAGCAGTACAGATCAAAATAAAATCTTGAAGAAACCAGACAAGATTCTTCACTGTCCCCGATGCAACAGTTTGGACACTAAATTCTGTTATTTCAATAACTACAACGTCAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGCGGAACAATGAGAAATGTTCCTGTGGGTGCTGGGAGACGAAAGAACAAGCACCTAGCTTCACAATACCGGCACATTATCGTAGCTTCTGATGGAATTCCAACCACCAGGTTCGAAACCAACAACTCTTCAAGTCACCAACCTGTCTCAACTCTTGAATCTGCTGCTGTTTTCAGGTCATCAACAGATAATGATACTGTATTGAAATTTGGTCCAGATGCCCCTCCTCTATGTGAACCCATGGGGTCAATACTTAATCTTAAAGAACAAAAAATAAGTGTTGATGAAAACTCTATCAATTGTGCAGAAAATGGTGAGGAGGAAGTATCCTTATGTGGATCATCTGTGACCAATGCTTGTACTCCAAGAAATGAATTGTCAGAACATAATGCATCAAAAACTTTGCAGTGTTATCCTGTTCCTCCATGGATATTCCCTTGGAATCCAGGTTGGAACAATGTTGCTTCCACGGCAGCAGTTCACCCGTCTTCACTGCACATGTGTAACCCTTATAGTGCTGACTCTGCTTCAATGCAGTGGTGTGCCACACCGATGGTGGCGGTTCCAACCATCTGCCCACCAAGCTTTCCCTTGCAATTTGATCCTGGATCATACTGGGGTGGACCACCTGTGTGGGGTGCTGGAACAGGGACAGTTTCAATGGGTTTCAATGGTTGCCTTTCACCTACTTCCTCTACTAGTAACAGCTGCAGCTCAAGCAATGGCTCTCCAACAGTTGGCAAACACACAAGAGACACTGTTTCCACCGATCAAGAGAAATCAGAAATGTGTGTTTTGGTTCCGAAGACCCTTAGAATTGATGATCCAAATGAGGCCTCAAAATGTCCTATATGGGCTACATTAGGAATCAAGCCTGATAACCAGCAATCTATATCAGAAGATGCTGCTATTTCCAAAAGGGCAATGCCTAAAGAAGGCAAAGACCGCGTGTTGGGTGTGTCTCAAATCTTGGAAGCTAACCCTGCAGCTATTTCTCGTGCTCATGCATTCCAGGAGAGCATATAA 1440 0.4368 MSSEGDMSNKDPGIRLFGRKIPLPECQIPNACSDLKKTEIEMPCAENSEQPENSSDLRDSKQESLHNVQENGSKVNAKPVEDNMESSSTDQNKILKKPDKILHCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYRHIIVASDGIPTTRFETNNSSSHQPVSTLESAAVFRSSTDNDTVLKFGPDAPPLCEPMGSILNLKEQKISVDENSINCAENGEEEVSLCGSSVTNACTPRNELSEHNASKTLQCYPVPPWIFPWNPGWNNVASTAAVHPSSLHMCNPYSADSASMQWCATPMVAVPTICPPSFPLQFDPGSYWGGPPVWGAGTGTVSMGFNGCLSPTSSTSNSCSSSNGSPTVGKHTRDTVSTDQEKSEMCVLVPKTLRIDDPNEASKCPIWATLGIKPDNQQSISEDAAISKRAMPKEGKDRVLGVSQILEANPAAISRAHAFQESI 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02493 479 PANTHER CYCLIC DOF FACTOR 2 9 478 IPR045174 GO:0003700|GO:0006355
Pumo4g02493 479 Pfam Dof domain, zinc finger 99 156 IPR003851 GO:0003677|GO:0006355
Pumo4g02493 479 ProSiteProfiles Zinc finger Dof-type profile. 102 156 IPR003851 GO:0003677|GO:0006355
Pumo4g02493 479 MobiDBLite consensus disorder prediction 370 395 - -
Pumo4g02493 479 ProSitePatterns Zinc finger Dof-type signature. 104 140 IPR003851 GO:0003677|GO:0006355
Pumo4g02493 479 MobiDBLite consensus disorder prediction 370 389 - -
Pumo4g02493 479 MobiDBLite consensus disorder prediction 66 91 - -
Pumo4g02493 479 MobiDBLite consensus disorder prediction 42 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02493 Pumo-Chr4 40240321 40243268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02493 7 479 C2C2-Dof Transcription Factor Family AT3G47500 34.840 6.51e-69 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo4g02493 zf-Dof 5.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02493 - - ccaj:109792807 836.639