Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02487 ATGCATGCATGTACTGATGTACATCGATCATCACATGGAATAGAGACAAAGATGTACGAAGAAAGTAGTTGCTTTGATCCCAATGCAATGATGGCAGAGGGAACAGGAGGAGCAGGAGAAGAGTGCTTCCCCCAAATGGTTTCAGAATCAGAGGCAGTTATGTCTGCCACTGCCACACAGACCCACCACAACACCACCTTTGCTGTTGAAAACTTAGCCTACTCCTATTCCAGTGGAGAAGATGCTGCAAATAGAGTTGTTGCTGCTGCTGCTGCCACTGCAATGGAAATCATTTCAGCACATCCCCAACAAAATTCATACAATTATAGCAACAGCTTCAACACCCAATTTGTGGAAGAGCTTTATTCCTTCCCCCACTCCACCACCATCACCACCACTACCACACTTGAGAATCAGCAATTTCCTTATTCTACACCAACACCAGATCTCCTTAACCTTCTCCATTTGCCAAAACCCTCTGTTCCTATGGGAACAGCAGCAGACAGCACAAACGTCTCCTCTGTTTCCTATGATCCTTTCTTGCATCTGAACCTGCAAGCACCTCCCCTCAGAGATTTGCTTCCACAAATGCCGGCGGCTCTGAGAAATGATTTTGCCTTTGACATACAAGGCACTGGAGTTGCCTATCAAGATTTTGGAAATGGAGTGGTGGACTTCACTCAAGATGTTGGGAAAAAGAGAGGGGGAAAAAGGACCAATCAGTTTACAAGTACAACCACTGAGAGACAAAGGAGAGTGGATTTGAGTAGCAAATTTGATGCTTTGAAAGATCTCATCCCAAATCCCTCCAAGAGTGATAGAGCATCCGTGGTGGGAGATGCTATTAACTATATCAGAGAGCTTAAAAGGACAGTGGACGAGCTCAAATTATTGGTGGAGAAGAAAAGGCACGAGCAACAAAGGGTGAAGCACAGGGTTGAAACTGAAGGCGATGACTCCAAGATGGACCCTGCAGACTACAGTGAAAGCTTGAGAAGTTCTTGGATACAAAGAAAATCCAAAGACACCGAGGTTGATGTGCGCATTGTTGACAACGAGGTAACAATTAAGCTTGTTCAAAGGAAGAAGATGGATTGCTTGGTGCATGTCTCACACCTTCTGGATCAACTTAACCTCGATCTCCAACATGTTGCTGGTGGTCACATTGAAGCCGATTTTCCTAAGAACTCAGCAACAATACGATCAAACAACACAGAATATGTAGAGCCTGTGTCGTTAATTACCGTCAAATTCACAGCAACAATACAATCAAACAACACAAAACATGTAGAGTCTATGTCGTTAATTACCGTCAAATTCAATGTGTACCTATAA 1335 0.439 MHACTDVHRSSHGIETKMYEESSCFDPNAMMAEGTGGAGEECFPQMVSESEAVMSATATQTHHNTTFAVENLAYSYSSGEDAANRVVAAAAATAMEIISAHPQQNSYNYSNSFNTQFVEELYSFPHSTTITTTTTLENQQFPYSTPTPDLLNLLHLPKPSVPMGTAADSTNVSSVSYDPFLHLNLQAPPLRDLLPQMPAALRNDFAFDIQGTGVAYQDFGNGVVDFTQDVGKKRGGKRTNQFTSTTTERQRRVDLSSKFDALKDLIPNPSKSDRASVVGDAINYIRELKRTVDELKLLVEKKRHEQQRVKHRVETEGDDSKMDPADYSESLRSSWIQRKSKDTEVDVRIVDNEVTIKLVQRKKMDCLVHVSHLLDQLNLDLQHVAGGHIEADFPKNSATIRSNNTEYVEPVSLITVKFTATIQSNNTKHVESMSLITVKFNVYL 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02487 444 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 288 IPR011598 GO:0046983
Pumo4g02487 444 Gene3D - 231 317 IPR036638 GO:0046983
Pumo4g02487 444 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 239 314 IPR036638 GO:0046983
Pumo4g02487 444 SMART finulus 245 294 IPR011598 GO:0046983
Pumo4g02487 444 Coils Coil 285 305 - -
Pumo4g02487 444 PANTHER TRANSCRIPTION FACTOR BHLH91 16 389 IPR045895 GO:0006355|GO:0048658
Pumo4g02487 444 MobiDBLite consensus disorder prediction 306 326 - -
Pumo4g02487 444 Pfam Helix-loop-helix DNA-binding domain 247 288 IPR011598 GO:0046983
Pumo4g02487 444 CDD bHLH_AtMYC1_like 246 308 IPR045896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02487 Pumo-Chr4 40111796 40123283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02487 18 389 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 35.059 1.05e-65 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g02487 HLH 5.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02487 - - vra:106767981 479.559