Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02477 ATGATGGATTCTGTTCTCTCCTTGGATACTCCCACTAATGCCTTCCCACACCCACCCCCACCCCTTCCCTCTTCCACACCCCCTTCACTTTCACATTCACAACCCTCACTCCCACCAACTCTCTTAGTCCCCAAGCCCGAACCCTTCTGGGACAGTCACAACGACATCGCCGACGAGCTCGACCTCTACTCCGAGTTCAACCGCGTCACCGAGCTGTTCCACTTCGCCTTCGGAGGCACCAACGTTGTCGCTCCGCCGCCGGACCCCTTCGGAGCTGTGAATGTTGCATGCCCCGGCCCGAGCACGGTCCCTCCGGACCGGGACCTCCTCGATTCGGTGCTCCAGCCCGACCCGAATTCGTCTTCTCCCAGGGACGACGTCTCCCGAGCAATCGTTCCGGTGCCGGAGGCGGCGGCGGAAGGGACGGTGGCCGTGACCGTGCCGAGGCGGAAGCAGAGCCGGCAGAAGGAGCTGGTGAGGGTGATGGATCTGTCGGCGAGGGACGAGGCTCTCTTGCGGGAGAACGTGAGGAGGACGCGGCTGATATACGACTCGCTGCGAGTGTTGACCGCCGTGGAGGAGGAGAAACGAGCAGCCGCCGCCGCCGCCGCTGCCTCGGCGGCGGCAGCGGAGGGCAAAGCGCGGCGTCTCCGCGGGGACCTGCGAGCGGCTGGGCTGATGAGAGAGCGTGGACTGTGGTTGAATCGTGAAAAGAGGATAGTTGGGGCCATCCCTGGAATTTTGGTTGGGGATTTATTCCTTTTTCGGATGGAGCTGTGTGTGGTTGGATTGCACGGTCAGATACAGGCTGGCATAGATTATCTTCCAGGGAGCATGAGTTCCACTGGGGAGCCTATAGCCACAAGTGTGATTGTTTCTGGTGGCTATGAGGATGACATGGATGATGGTGAGGTTATAGTTTACACTGGCCATGGAGGGCAGGGGAAGAATTCTTCCAAGCAGGTTGCTCATCAGAAGTTGGAGTCAGGGAACCTTGCATTGGAGAGGAGTATGCATTATGGCGTCGAGGTGAGGGTTATTCGCGGGATGAAGTACGAGGGGAGTGCTGCTGGTTCTGGTAAGGTGTATGTGTATGATGGGGTGTATAGGATTGTTGATTGCTGGTTTGATGTGGGGAGGTCTGGTTTTGGAGTTTATAAGTTTAAGCTTTGGAGGATTGAGGGGCAGGCTAGGATGGGCAGTGCTATTTTGAAGGAAGCTAGGAATATTAGGAGGAGTCAGTTGGATTTGATGAAGCCTGTGTGTTGTCTTTCTGCTGATATGTCAAACAAAAAGGAGAATGTTGCCGTTCGGCTTTTTAATGACTTGGATGATGACCGGGGCCCTCTTTGCTATGAGTATCTTGCCAGGACTAGTTTCCCGCAGTTTGTGTTTCATCAGAGTGGGAAAGCTACTGGTTGTGACTGTGTGGATGGTTGTGGGGATGGATGCTTTTGTGCTATGAAAAATGGGGCCGAGTTTCCTTATACTCTGCAGGGGCATCTCGTGAGAGGGAAGCCTTTGATTTTTGAATGTGGCCCATTTTGCTCTTGTCCTCCTCATTGTCGCAATCGTGTTGCGCAGAAGGGGCTGAAATATAGGTTGGAAGTGTTTAGGTCTCAGCAGACAGCTTGGGGAGTTAGGTCCTTGGACCTTATTCAAGCTGGTGCTTTTATCTGCGAGTTTGCAGGGCTTGTTTTGACCAGGGAGCAAGCGCAACTCTTGACAATGAATGGTGACTCGTTGATTTATCCTAATCGGTTTTCGGAAAGATGGGCAGAATGGGGGGATTTGTCTCAGATATACCCAGATTATGTGCGTCCATCGTATCCATCAATTCCTCCTTTAGATTATTCTCTGGACGTGTCAACAATGAGGAATGCTGCTTGCTATATGAGCCATAGTTCAACTCCAAATGTATTGGTTCAGTTTGTTCTGTATGATCACAACAATTTGATGTTCCCGCACCTTATGCTATTTGCAATGGAAAACATCCCTCCCATGAGAGAGCTCAGCCTTGATTATGGTGTAGCTGATGAGTGGACAGGCAAGCTCTCTATATGTAACTGA 2070 0.5266 MMDSVLSLDTPTNAFPHPPPPLPSSTPPSLSHSQPSLPPTLLVPKPEPFWDSHNDIADELDLYSEFNRVTELFHFAFGGTNVVAPPPDPFGAVNVACPGPSTVPPDRDLLDSVLQPDPNSSSPRDDVSRAIVPVPEAAAEGTVAVTVPRRKQSRQKELVRVMDLSARDEALLRENVRRTRLIYDSLRVLTAVEEEKRAAAAAAAASAAAAEGKARRLRGDLRAAGLMRERGLWLNREKRIVGAIPGILVGDLFLFRMELCVVGLHGQIQAGIDYLPGSMSSTGEPIATSVIVSGGYEDDMDDGEVIVYTGHGGQGKNSSKQVAHQKLESGNLALERSMHYGVEVRVIRGMKYEGSAAGSGKVYVYDGVYRIVDCWFDVGRSGFGVYKFKLWRIEGQARMGSAILKEARNIRRSQLDLMKPVCCLSADMSNKKENVAVRLFNDLDDDRGPLCYEYLARTSFPQFVFHQSGKATGCDCVDGCGDGCFCAMKNGAEFPYTLQGHLVRGKPLIFECGPFCSCPPHCRNRVAQKGLKYRLEVFRSQQTAWGVRSLDLIQAGAFICEFAGLVLTREQAQLLTMNGDSLIYPNRFSERWAEWGDLSQIYPDYVRPSYPSIPPLDYSLDVSTMRNAACYMSHSSTPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEWTGKLSICN 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02477 689 ProSiteProfiles Pre-SET domain profile. 472 530 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo4g02477 689 Pfam SET domain 545 676 IPR001214 GO:0005515
Pumo4g02477 689 Pfam SAD/SRA domain 241 396 IPR003105 -
Pumo4g02477 689 Gene3D - 239 400 IPR036987 -
Pumo4g02477 689 MobiDBLite consensus disorder prediction 13 44 - -
Pumo4g02477 689 SMART set_7 533 682 IPR001214 GO:0005515
Pumo4g02477 689 MobiDBLite consensus disorder prediction 1 44 - -
Pumo4g02477 689 SUPERFAMILY PUA domain-like 223 407 IPR015947 -
Pumo4g02477 689 ProSiteProfiles SET domain profile. 533 676 IPR001214 GO:0005515
Pumo4g02477 689 ProSiteProfiles YDG domain profile. 242 392 IPR003105 -
Pumo4g02477 689 SMART preset_2 425 517 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo4g02477 689 Gene3D SET domain 401 689 IPR046341 -
Pumo4g02477 689 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 75 689 IPR025794 GO:0016571
Pumo4g02477 689 SUPERFAMILY SET domain 419 688 IPR046341 -
Pumo4g02477 689 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 118 677 - -
Pumo4g02477 689 SMART G9a_1 237 396 IPR003105 -
Pumo4g02477 689 Pfam Pre-SET motif 428 525 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02477 Pumo-Chr4 39872598 39874667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02477 137 678 Su(var)3-9 homologs AT5G04940 36.036 3.61e-101 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo4g02477 SAD_SRA 2.8e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02477 K11420 - gmx:100785015 1129.78