Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02455 ATGGAGAAACTGAAACTGTCTGCTAAGAATGATCCTGCTCATGCCAGCAGTGATCAGGCAGATTTATTTCCAATATTCGAACTGCGAGAGAGTCAAAATGTGGGACAGCAGAGTAGTAGTAAAAGAGAGGAAGATGATACAAAAGCTGTAATTGCTCCCTCTAATTCTGCAAACACTAGGGAACCTGTCAACAAGTGGATGGCATTTGCAAAGAAGCCTGGTTTCACAGCTGATGGCAACTCAGCAACAACAGATAAAAGCATAACCGAAGACAATAAGTCGAGGAATCATCTGAAAGAGAAGCCGTCGTCTGATCAGCAAATTCTAACCGAAGCAACCATAGCTGAGAGAGCTGCAGAATGGGGTCTTATGGTGAACTCAGGGAATTTCAAAGCAATATTGGGAGAGAATACAAGTGCAGCTTTTGAGGGTGACAGAAGCAGAAACTTGTCAGATAGGTTTGTTGAATCAACACGGACGTCTGGGGAGTCAAATTTCGGATCTGAGTCATCATCAGGGGTGTTTCCAAGGGTGTCACAAGAGTTGAAGGAAGCATTGTCGACACTGCAACAGACATTTGTTGTCTCAGATGCAACCAAACCAGACTGCCCAATCATGTATGCCAGCAGTGGCTTTTTCACTATGACTGGCTATTCTTCAAAGGAGATTATTGGAAGGAATTGTCGATTTCTTCAGGGGCCTGAGACAGACAAGAATGAAGTGGCGAAAATTCGGGATGCAGTTAGAAATGGGAAAAGTTATTGTGGCAGACTTTTAAACTACAAGAAGGATGGAACTCCATTCTGGAATCTTCTCACTGTCACCCCCATCAAAGATGACCACGGCAAAACTATCAAATTCATTGGAATGCAGGTTGAGGTGAGCAAGTACACAGAAGGCGTGAATGAAAAGGCATTACGACCAAATGGATTGCCTAAGTCATTAATTCGTTATGATGCTCGTCAAAAGGAGAAAGCTTTGGGTTCCATCACTGAGGTTGTTCAAACTGTTAAGGACCCAAAATCCATTATGAATGATAGGAATGATGATACTGCCACCAAGCATGAAGAGCAAGAGAAATTAAATTTTGATTTTGTTTTGCCAAAGTCTGCTGATATTGGGAATACAAGCACACCTGGTAGACAAGCTTCTCCACTGAACATCCAACGCATGAGTTCTAGTCAGGATAAGAGCAAGACATCAAGATCAGGACGGATTTCTTTCAAGGGTTTTAAAGGGAGATCTCTGAGTTCTGCAGAGGAGAAGCCCATTGTTGAACCTGAGGATTTGATGACCAAGGAAATAGAGTGGTCTAACAATTTGGAGCATTCACTAAGAGAGAGGGACATAAGGCAGGGAATTGATCTAGCAACCACATTGGAGCGGATAGAAAAGAACTTTGTGATTTCTGATCCTAGACTTCCAGATAACCCAATTATATTTGCATCTGATAGCTTTCTTGAACTTACGGAATATACACGAGAAGAAATTTTGGGACGAAATTGTCGGTTTCTTCAAGGACCAGAAACAGATCAGGCAACTGTTGCCAGGATAAGGGATGCTATCAGAGAACAGAGGGAAATCACTGTACAGTTGATCAACTATACTAAGAGTGGAAAGAAGTTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATATAGAACCCTTAAAAAACCGGCTGTCTGAGACAACCGAGCAACAAAGTGCTAAGTTGGTGAAAGCCACTGCAGAAAATGTCGATGAAGCTGTCCGAGAACTTCCAGATGCCAACTTGAGACCAGATGATTTGTGGGCAATTCATTCCCAACCTGTCATTCCAAAACCTCACAAAAAGGACAATCCTTCTTGGATAGCAATACAAAAGGTAGCTGCAAGAGGCGAAAAAATTGGCCTGCAACATTTTGTGCCCATAAGGCCGTTGGGTTGTGGAGATACTGGCAGTGTTCATTTGGTGGAACTCAAAGGTACTGGTGAACTATATGCAATGAAGGCAATGGAAAAGTCTGTAATGCTAAATCGTAATAAGGTTCACCGATCATGCATTGAGAGAGAGATTATATCATTATTGGATCATCCTTTTCTTCCAACACTATACACCTCATTTCAGACTTCTACACATGTATGTTTGATTACTGACTTCTTCCCTGGGGGAGAGTTGTTTGCATTGCTTGACAAGCAACCAATGAAGATTTTCAAAGAAGAATCAGCGAGATTCTATGCGGCAGAGGTTGTCATTGGTTTGGAATATCTCCACTGTTTAGGTATAATTTATCGTGACTTAAAGCCTGAAAATATCTTGCTTCAGAAGGATGGTCATGTTGTATTGGCTGATTTTGATCTATCATTTATGACATCTTGTAAACCCCAGGTTGTGAAGCAATCACTACCTGGTAAAAGAAGATCACGAACTGAACCACCACCAACATTTGTTGCAGAGCCAGTTACACAATCAAACTCATTTGTTGGAACTGAAGAATACATTGCCCCTGAAATTATAACTGGAGCTGGGCATACTAGTGGTATAGATTGGTGGACCCTTGGTATCTTGTTGTATGAGATGCTCTATGGTCGTACACCATTTAGAGGAAAGAATAGACAGAAGACATTTTCCAACATCTTACACAAGGATCTTACTTTTCCAAGCAGCATCCCGTCTAGTCTTGCAGCCAGGCAGTTGATTAATGCACTATTGCAAAGAGACCCAACAAGTCGTCTAGGTTCAACCACTGGTGCTAATGAAATCAAACAACATCCTTTTTTCCGTGGAATCAATTGGCCTCTAATCCGCAACATGACTCCACCCCCATTAGATGTTCCTCTTAAATTGATAGGAAAAGATCCAGTGGCAAAGGATATAAAGTGGGAAGATGATGGGGTACTAGTTAGCTCGATTGATATGGATATTTTTTGA 2967 0.4166 MEKLKLSAKNDPAHASSDQADLFPIFELRESQNVGQQSSSKREEDDTKAVIAPSNSANTREPVNKWMAFAKKPGFTADGNSATTDKSITEDNKSRNHLKEKPSSDQQILTEATIAERAAEWGLMVNSGNFKAILGENTSAAFEGDRSRNLSDRFVESTRTSGESNFGSESSSGVFPRVSQELKEALSTLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEIIGRNCRFLQGPETDKNEVAKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDHGKTIKFIGMQVEVSKYTEGVNEKALRPNGLPKSLIRYDARQKEKALGSITEVVQTVKDPKSIMNDRNDDTATKHEEQEKLNFDFVLPKSADIGNTSTPGRQASPLNIQRMSSSQDKSKTSRSGRISFKGFKGRSLSSAEEKPIVEPEDLMTKEIEWSNNLEHSLRERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVARIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHIEPLKNRLSETTEQQSAKLVKATAENVDEAVRELPDANLRPDDLWAIHSQPVIPKPHKKDNPSWIAIQKVAARGEKIGLQHFVPIRPLGCGDTGSVHLVELKGTGELYAMKAMEKSVMLNRNKVHRSCIEREIISLLDHPFLPTLYTSFQTSTHVCLITDFFPGGELFALLDKQPMKIFKEESARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLADFDLSFMTSCKPQVVKQSLPGKRRSRTEPPPTFVAEPVTQSNSFVGTEEYIAPEIITGAGHTSGIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPSSLAARQLINALLQRDPTSRLGSTTGANEIKQHPFFRGINWPLIRNMTPPPLDVPLKLIGKDPVAKDIKWEDDGVLVSSIDMDIF 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02455 988 NCBIfam PAS domain S-box protein 478 567 IPR000014 -
Pumo4g02455 988 NCBIfam PAS domain S-box protein 204 295 IPR000014 -
Pumo4g02455 988 PANTHER FLIPPASE KINASE 1-RELATED 157 955 - -
Pumo4g02455 988 FunFam LOV domain-containing protein 652 736 - -
Pumo4g02455 988 FunFam Putative LOV domain-containing protein 192 348 - -
Pumo4g02455 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 774 786 IPR008271 GO:0004672|GO:0006468
Pumo4g02455 988 Pfam Protein kinase domain 656 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02455 988 SMART pac_2 529 571 IPR001610 -
Pumo4g02455 988 SMART pac_2 255 297 IPR001610 -
Pumo4g02455 988 MobiDBLite consensus disorder prediction 368 424 - -
Pumo4g02455 988 Gene3D Transferase(Phosphotransferase) domain 1 737 954 - -
Pumo4g02455 988 ProSitePatterns Protein kinases ATP-binding region signature. 659 682 IPR017441 GO:0005524
Pumo4g02455 988 CDD PAS 205 294 IPR000014 -
Pumo4g02455 988 ProSiteProfiles PAS repeat profile. 452 525 IPR000014 -
Pumo4g02455 988 SUPERFAMILY PYP-like sensor domain (PAS domain) 199 291 IPR035965 -
Pumo4g02455 988 Gene3D Phosphorylase Kinase; domain 1 652 736 - -
Pumo4g02455 988 FunFam Putative LOV domain-containing protein 737 951 - -
Pumo4g02455 988 CDD STKc_phototropin_like 651 962 - -
Pumo4g02455 988 SUPERFAMILY PYP-like sensor domain (PAS domain) 471 567 IPR035965 -
Pumo4g02455 988 FunFam LOV domain-containing protein 441 605 - -
Pumo4g02455 988 Gene3D PAS domain 192 361 - -
Pumo4g02455 988 Pfam PAS domain 199 295 IPR000014 -
Pumo4g02455 988 Pfam PAS domain 475 567 IPR000014 -
Pumo4g02455 988 MobiDBLite consensus disorder prediction 1 107 - -
Pumo4g02455 988 ProSiteProfiles Protein kinase domain profile. 653 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02455 988 MobiDBLite consensus disorder prediction 371 405 - -
Pumo4g02455 988 SMART serkin_6 653 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02455 988 ProSiteProfiles PAS repeat profile. 178 251 IPR000014 -
Pumo4g02455 988 Gene3D PAS domain 441 605 - -
Pumo4g02455 988 ProSiteProfiles PAC domain profile. 526 580 IPR000700 -
Pumo4g02455 988 SUPERFAMILY Protein kinase-like (PK-like) 632 964 IPR011009 -
Pumo4g02455 988 SMART pas_2 180 249 IPR000014 -
Pumo4g02455 988 SMART pas_2 454 523 IPR000014 -
Pumo4g02455 988 CDD PAS 475 567 IPR000014 -
Pumo4g02455 988 ProSiteProfiles PAC domain profile. 252 306 IPR000700 -
Pumo4g02455 988 MobiDBLite consensus disorder prediction 88 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02455 Pumo-Chr4 39042405 39065150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02455 112 987 AGC Kinase Gene Family AT5G58140 75.028 0.0 1318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Pumo4g02455 Pkinase 5.6e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02455 K20715 - gmx:100820096 1829.68