Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02453 ATGGCGACGCTGCTGAGAAAACTTTGCGAATCGGCGTCGCTGAAGCGATCCAGCTCGAACCCGAACCCGAACCCGAACCCAGAAGCTCGCGCTCCGACCCCACTGGGCGCTTTCGAGCCTCTCCCCGGCGACATCCTCATGCAAATCGCGCGAATCTTGGGCCCCAAAGAGGCCGCCAGACTGAGCCTGGTGTGCAAGTCGTGGCGGGCCCTCGTCTCCGACAACGCCCTCTGGGCCCACTTCCTCCAAGCCCACCACCCCCGCTCCGCGCTCTTCGCCGAAACTGCTCTCAGCTCTGGCTACCCTCTTCTTCCTCTTCCGACCTTGGCTGCTCAGAATTCGCCACGTGTCTCGTTGCAGCATGTTTACGCCCTCCGTGAACGACTCTCTCCTTCCGTTGTCATCGACGGGGGTTCTGGCTATTGCAAATTCGGTTGGAGCAACGGCGCTTCTCCTTCAGGGAGACTCGCGACTTTTTCGGAATTTGGTAATGTTGAAACGCCTATGTATACTAGACTTCGACATTTTTTCGCGACCATCTATAACAGGATGCAGGTGAAACCAAGTTCTCAATCAGTTGTTGTTTCTATACCAATATGCCACTATGATGATACTGAATCAGCCAAAGCATCAAGACAGCAGCTTAAGGAAGCAATCTATGCTGCCCTGTTTGACATGAATGTTCCTGCTGTTTGTGCTCTCAATCAGGGGACTTTAGCTCTGTATGCTGCAAATCAAACTTCTGGGATAGCTGTTAATATAGGTTTTCAAGTCACATCTATAGTTCCAATTTTAAATGGTAAAGTGATGCGAAAGGTGGGTGTGGAGGTTGTGGGGCTGGGAGCACTAAAACTTACCGGATTTCTTAGACAACAAATGCAACAAAACAACATAAGTTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAGAAGCTATGTTATGTTGCTGTTGACTATGAAGCTGAGCTATTGAAAGATACACAAGCATCATTTGAAGCTGTAGAAGGGTTGTTTACACTCTCAAAAGAGCGTTTTCAAACAGGAGAGATCTTATTCCAGCCACGTCTTGCTGGGGTGCGAGCAATGGGTTTGCAGCAGGCCATTGCACTTTGTATGGATCATTGCTATTCTGCAGAATTAGCAGGCAACAATGATTGGTATAAGACTGTTGTCTTATCAGGGGGAACTGCCTGTTTACCTGGTTTAGCAGAAAGGTTAGAAAAGGAACTTCATTCGTTACTTCCTCCTTATATTTCCAATGGAATTAGAGTCATACCTCCTCCATTCGGCGCGGATACTGCATGGTTTGGTGGAAAGATTATTGGCAGTGTGAGTTATCTACGTAGTCTGATAAATATTCAAATTTTGTTTGCTGCAGAGGATGTCACTTTATTATCAATTAAAGTCTTGAACCTTCCTGTAAAACTGTATTGA 1437 0.4718 MATLLRKLCESASLKRSSSNPNPNPNPEARAPTPLGAFEPLPGDILMQIARILGPKEAARLSLVCKSWRALVSDNALWAHFLQAHHPRSALFAETALSSGYPLLPLPTLAAQNSPRVSLQHVYALRERLSPSVVIDGGSGYCKFGWSNGASPSGRLATFSEFGNVETPMYTRLRHFFATIYNRMQVKPSSQSVVVSIPICHYDDTESAKASRQQLKEAIYAALFDMNVPAVCALNQGTLALYAANQTSGIAVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLRQQMQQNNISFESLYTVRTLKEKLCYVAVDYEAELLKDTQASFEAVEGLFTLSKERFQTGEILFQPRLAGVRAMGLQQAIALCMDHCYSAELAGNNDWYKTVVLSGGTACLPGLAERLEKELHSLLPPYISNGIRVIPPPFGADTAWFGGKIIGSVSYLRSLINIQILFAAEDVTLLSIKVLNLPVKLY 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02453 478 Gene3D - 37 81 - -
Pumo4g02453 478 SMART fbox_2 41 81 IPR001810 GO:0005515
Pumo4g02453 478 SMART actin_3 130 452 IPR004000 -
Pumo4g02453 478 SUPERFAMILY F-box domain 29 94 IPR036047 GO:0005515
Pumo4g02453 478 Pfam F-box-like 41 80 IPR001810 GO:0005515
Pumo4g02453 478 SUPERFAMILY Actin-like ATPase domain 247 450 IPR043129 -
Pumo4g02453 478 CDD NBD_sugar-kinase_HSP70_actin 133 277 - -
Pumo4g02453 478 PANTHER ACTIN 174 446 IPR004000 -
Pumo4g02453 478 MobiDBLite consensus disorder prediction 12 35 - -
Pumo4g02453 478 SUPERFAMILY Actin-like ATPase domain 131 252 IPR043129 -
Pumo4g02453 478 ProSiteProfiles F-box domain profile. 35 81 IPR001810 GO:0005515
Pumo4g02453 478 Gene3D - 178 449 - -
Pumo4g02453 478 Pfam Actin 180 450 IPR004000 -
Pumo4g02453 478 Gene3D Actin; Chain A, domain 4 280 362 - -
Pumo4g02453 478 Gene3D - 237 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02453 Pumo-Chr4 39002006 39012110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02453 179 451 Cytoskeleton Gene Families AT3G12110 31.449 7.67e-37 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02453 K16616 - gmx:100804254 775.778