Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02446 ATGATAGATTTAAAGATGATAACTGATGGTGAAAAGTCCAAAGATGGGGTATCTGGTCCAAAGAAGGGAAGTAGGTATGTACCATCTTTTATTCCACCTCCAATGGCAACCAAGGGGAAAGAATCTGAAAGGAAAAAAGAGGAGGAAAAGCCAAAGGACAAAGAGAAAGGGAAGTCAAGAAACATTGATCATTTTATGGAGGAGCTAAAGCATGAGCAAGAGATGAGGGAGAGGCGAAATCAAGAACGTGAACATTGGCGTGACGGCCGTCACGCAGAACATTCTATTTCCAGTCGCTTTGATGAGCTGCCTGATGACTTTGACCCAAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCTCAAACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGGTTGATGAAAATTTTCTTCTCCGTACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATTATGTGGCCAAGGACAGAGGAGGAGAGAAGGCGGCAAAGAAACTGTGGCTTTGTAGCTTTCATGAACAGAGCTGATGGACAGGCAGCGAAAGATGAAATGCAAGGAGTTGTGGTTTATGAATATGAATTGAAAATTGGATGGGGAAAGTCTGTTGCCCTCCCATCGCAAGCACTACCTGCACCTCCACCAGGGCATATGGCCATCAGGAGTAAGGAGGGTAGTACTGTGATCTTGTCTGGTCCTTCAGGTCCGCCAGTAACATCTGTTCCTAATCAGAATTCTGAACTGGTTCTAACTCCTAATGTTCCTGATATAATGGTTATGCCTCCCGAGGATGAACATTTAAGGCATGTAATTGATACAATGGCTTTGTATGTCCTGGATGGAGGATGTGCTTTTGAACAAGCTATTATGGAGAGGGGTCGTGGCAATCCTCTTTTCAACTTCTTGTTTGTTCTTGGCTCAAAGGAACACACCTACTACGTATGGAGACTCTACTCATTTGCCCAGGGTGATACTCTTCAAAGATGGAGGACTGAACCTTTTATCATGATAACGGGTAGTGGAAGATGGATTCCTCCCCCATTACCAATGTCAAAAAGTCCAGAACATGAAAAGGAGTCTGGTTCCACACATGCTGGAGGAAGAAGCAGGCGTGTAGAGCCTGAAAGAACACTGACTGATGCACAGAGGGATGAATTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGCCAGATCAAAGAGGCTATGGGGTTTTCTTTAGATAATGCCGATGCAGCTGGCGAGATAGTTGAAGTTTTGACTGAATCCTTGACACTTAAAGAAACCCCTATTCCAACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCAGCATATCGCACCAAGTTTGAAGCAACATTACCGGACATAATGGAGAGTTTTAATGACTTGTATCGTAGCATAATGGGACGTATTACTGCTGAAGCCCTAAAGGAACGAGTGCTGAAAGTTTTACAAGTTTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTGAATGGCTTAAGAGCCACTTTTCTTCGAGCTGGGAACTCTGGTGTAATTCCATTCCATTCCATTTGTGGTGATGCACCTGAGATTGAGCAGAAGACCACTTCCGAAGATACAGTTGTTGGTGGCAAGACCAACCAAGATGCTGCATTGGCAATGGGTCGAGGGGCTGCAACGAAGGAGCTAATGAGTCTTCCTCTTGCTGAGCTGGAAAGACGGTGCCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGCTAAGTCTTGAAGAGGCAGAAAAGCAGAGAGGTTATGAACTAGATGACGAATTGAAATATGCCCACAACCAAGTGAGTTCTGGGAAATATTCAAGTAATCGACGAGAAACAAGTGCTGAGCCTGAACCAGTAGGACTGTCTGCATGGAACCAATATGGGGATGAAGATTTGCAGTCACAAGGCAGAAGTTCTGTATCTTTATCCCCTACCCTTCCTATTCCACAGCCTGAACTTAAAGCTTTCACAAAAAAGGAGAAGAATGATCCAGTTCTTCCAGCTTCTAAATGGGCTCGGGAGGATGATGAGAGTGATGATGAACAAGGGAGAATTGGAAAAAATCTCGGCTTAAGCTACTCATCTTCTGGTAGTGAGAATGCGGGTGATGGTCTTGTTAAAGCTGATGAATCAGAGTCTGCAGCTGATACAAGTTTTTCAGCTCATGCTGACAGTGGAATGAATGAAGAGCAGAGGCAAAAGCTGAGACGCTTGGAGGTAGCTTTAATTGAATACCGTGAGTCTCTTGAAGAGAGGGGAATTAAAAATTTGGAGGAAATTGACAAGAAAGTTCAGTTGCATAGGAAACGGCTGCAAGTGGAGTATGGTTTATCAGATTCTGGTGAAGATGGTCAGGGCAATAGAAGAACTTCAGAGAGGAGGGATAGGCATGATGTTTCAAGGAAACGTCACCGAAGCCGTAGTCCAAGTGGTAGTCCACAGCCAAAATTATCCGGCAAAGACAGAGATAGAGAACATGATTTAGAAAGGGATCGAGACAGACAAAGAGATAGAAGTCATGATTTCGACAGTGAAAGAGGAAGGGACCGGCACCGGGAAAAGAGTGGAAGCCGAGAGAGGGACGATCATGATAAGGATAGAAGCAGGGATAGGGATAGGGATAGGGACAGGAGACGACGGAACAAATAA 2742 0.4409 MIDLKMITDGEKSKDGVSGPKKGSRYVPSFIPPPMATKGKESERKKEEEKPKDKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHAEHSISSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPVTSVPNQNSELVLTPNVPDIMVMPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPMSKSPEHEKESGSTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRAGNSGVIPFHSICGDAPEIEQKTTSEDTVVGGKTNQDAALAMGRGAATKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAHNQVSSGKYSSNRRETSAEPEPVGLSAWNQYGDEDLQSQGRSSVSLSPTLPIPQPELKAFTKKEKNDPVLPASKWAREDDESDDEQGRIGKNLGLSYSSSGSENAGDGLVKADESESAADTSFSAHADSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIDKKVQLHRKRLQVEYGLSDSGEDGQGNRRTSERRDRHDVSRKRHRSRSPSGSPQPKLSGKDRDREHDLERDRDRQRDRSHDFDSERGRDRHREKSGSRERDDHDKDRSRDRDRDRDRRRRNK 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02446 913 ProSiteProfiles SAP motif profile. 576 610 IPR003034 -
Pumo4g02446 913 SMART surpneu2 272 326 IPR000061 GO:0003723|GO:0006396
Pumo4g02446 913 Gene3D - 35 208 IPR012677 -
Pumo4g02446 913 Gene3D - 758 809 - -
Pumo4g02446 913 MobiDBLite consensus disorder prediction 1 19 - -
Pumo4g02446 913 SMART 558neu5 389 524 IPR006569 -
Pumo4g02446 913 MobiDBLite consensus disorder prediction 356 382 - -
Pumo4g02446 913 ProSiteProfiles CID domain profile. 382 527 IPR006569 -
Pumo4g02446 913 Gene3D - 382 529 IPR008942 -
Pumo4g02446 913 Pfam Surp module 272 324 IPR000061 GO:0003723|GO:0006396
Pumo4g02446 913 ProSiteProfiles SURP motif repeat profile. 274 317 IPR000061 GO:0003723|GO:0006396
Pumo4g02446 913 MobiDBLite consensus disorder prediction 630 644 - -
Pumo4g02446 913 MobiDBLite consensus disorder prediction 803 913 - -
Pumo4g02446 913 CDD RRM_SR140 124 207 IPR035009 -
Pumo4g02446 913 MobiDBLite consensus disorder prediction 630 763 - -
Pumo4g02446 913 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 206 IPR000504 GO:0003723
Pumo4g02446 913 Coils Coil 387 407 - -
Pumo4g02446 913 SUPERFAMILY Surp module (SWAP domain) 248 329 IPR035967 GO:0003723|GO:0006396
Pumo4g02446 913 MobiDBLite consensus disorder prediction 848 913 - -
Pumo4g02446 913 SMART cwf21_2 758 807 IPR013170 -
Pumo4g02446 913 MobiDBLite consensus disorder prediction 1 120 - -
Pumo4g02446 913 MobiDBLite consensus disorder prediction 685 715 - -
Pumo4g02446 913 Pfam cwf21 domain 759 803 IPR013170 -
Pumo4g02446 913 SUPERFAMILY RNA-binding domain, RBD 118 213 IPR035979 GO:0003676
Pumo4g02446 913 CDD cwf21_RRC1-like 758 807 IPR047491 -
Pumo4g02446 913 PANTHER RNA PROCESSING PROTEIN LD23810P 13 843 - -
Pumo4g02446 913 MobiDBLite consensus disorder prediction 38 108 - -
Pumo4g02446 913 Coils Coil 759 779 - -
Pumo4g02446 913 MobiDBLite consensus disorder prediction 658 677 - -
Pumo4g02446 913 MobiDBLite consensus disorder prediction 349 382 - -
Pumo4g02446 913 Pfam CID domain 389 517 IPR006569 -
Pumo4g02446 913 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 199 IPR000504 GO:0003723
Pumo4g02446 913 SMART rrm1_1 126 202 IPR000504 GO:0003723
Pumo4g02446 913 Gene3D Surp module 260 329 IPR035967 GO:0003723|GO:0006396
Pumo4g02446 913 SUPERFAMILY ENTH/VHS domain 386 524 IPR008942 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02446 122 202 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 2.63e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02446 K12842 - gmx:100776093 1623.99