Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02439 ATGACAATCCTCCGTGTGTTGCTCTTTCTGGGACTCTTGTGGGCTGAAATTCATGTCATTTCTTCATTCACTGATACTCAAGACGTTGTTGCACTTAGATCATTAAAAGATGTATGGCAAAATACACCGCCCAGCTGGGACAAATCAGATGACCCCTGTGGAGCACCCTGGGAAGGAGTGACCTGCAACAAATCAAGGGTTACTTCATTGGGACTGTCAACCATGGGCCTGAAGGGTAAATTAACTGGAGATATTGGTCAACTTACAGAGTTGAGATCCTTGGACTTGTCATTTAATAGAGGTTTAACAGGTCCTCTCTCTCCACAGTTAGGAGACCTGAGCAAGCTAAATATTTTGATTTTGGCTGGTTGCAGCTTCAGTGGCAATATTCCAGATGAATTAGGAAATCTTTCAGAGTTATCTTTCCTGGCTTTAAACTCAAACAACTTCACTGGAAAAATACCTCCTTCATTGGGTAAACTCTCCAAACTTTATTGGTTGGACTTGGCAGACAATCAGCTGACAGGGCCTATCCCTGTTTCAACCTCTACCACTCCTGGATTAGACCTTCTTTTAAAGGCTAAGCACTTCCATTTCAATAAGAACCAGCTTTCAGGTTCCATTCCCTCCAAGCTTTTCAGCTCTGAGATGATACTCATACACATATTGTTTGATGGGAATAATTTAAGTGGAACTATACCTTCAACATTAGTACTAGTTAAGACCGTTGAGGTTCTCCGCCTTGATAGGAATTTCCTTACAGGAGAGGTTCCATCAGATCTCGACAACCTTACAAACATCAATGAATTGAATTTAGCACATAATAAATTCACAGGTCCTTTGCCTGACTTAACTGGAATGGATACCCTCAACTATGTGGATCTTAGTAACAACTCTTTTGATCCATCTGAAGCTCCAACTTGGTTCACAACTCTTCCATCACTCACCACTCTTGTTATGGAGTTTGGATCCCTTCAAGGTTCTCTTCCATCGAAACTCTTTGGCATTCCTCAAATACAGCAAGTGAAACTACGAAACAATGCATTGAACAGTACATTGGACATGGGTGACAACATTTGTCCCCAATTGCAGCTTGTAGATTTGCAAAACAATGAGATTTCCACAGTGACACTCAGTTCGCAATACAAAAATACATTGATTCTTATAGGAAATCCAGTGTGCAGTACTGGTCTCTCAAATACAAACTACTGCCAACTTCAGCAACAGGCTAAGCAACCCTATTCTACCAGCTTGGCTAATTGTGGACGCGAATCTTGTCCTCCTGATCAAAAGCTCAGCCCCCAAAGTTGTGAATGTGCCTATCCATATGAAGGAATGATGTACTTTAGAGGACCCTCATTCAGAGAACTGTCCAATGTAAATACTTTCCATTCACTTGAAATGAGCCTGTGGGTGAAATTGGGTCTAACTCCTGGCTCAGTTTCTTTACAAAACCCCTTCTTCAATAGTGATGATTATCTTCAAGTGCAACTAGCACTCTTTCCACCAATAGGGGAATATTTTAATAGGTCAGAAGTGCAAAGAATTGGGTTTGAATTGAGTAATCAAACTTACAAGCCTCCAAAAGAGTTTGGACCCTACTACTTTATTGCATTTCCTTATCCTTTTCCAGGTTCCCACAAAGGAGCTTCTCTTAGCAAAGGTGTTGTTATTGGGATAGCAATTGGCTGCTCAGTTCTGGTTCTGAGCCTCATAGGGTTAGCTATATATGCAATTCTGCAAAAGAAGCGCGCAGAGAGAGCCATTGGATTAAGTAGACCATTTGCATCATGGGCACCAAGTGGCAAGGATAGTGGAGGTGCACCACAATTAAAGGGAGCAAGATGGTTCTCTTATGATGAGCTCAAAAAGAGCACCAACCATTTCTCTGAGAGCAATGAGATAGGCTTTGGTGGCTATGGCAAGGTATACAAAGGGGTTCTCCCTGATGGGAAAATCGTTGCAATCAAACGAGCTCAACAAGGATCAATGCAAGGAGGCCTAGAGTTCAAGACTGAAATCGAGTTGCTTTCAAGAGTTCACCACAAGAATCTTGTTGGCCTTGTTGGATTCTGCTTTGAACAAGGGGAACAGATGTTGGTTTATGAATTTATGCCCAATGGAACACTTAGGGAGAGTTTGTCAGGGAGATCTGACATTCATCTTGACTGGAAGAGGAGACTCCGCATAGCTCTTGGTTCAGCCAGAGGACTTGCATACTTACATGAGCTTGCCAACCCTCCCATAATCCACAGAGATGTGAAGTCCACTAATATCTTGTTGGATGAAAATTTGACAGCAAAGGTTGCAGATTTTGGTTTGTCTAAGCTTGTATCAGACAGTGAGAAAGGCCATGTTTCAACTCAGGTTAAAGGGACATTGGGTTACTTGGATCCTGAGTATTACATGACCCAACAACTCACTGAGAAGAGTGATGTGTACAGTTTTGGGGTAGTCATGCTTGAACTGATAACTTCAAGACAACCAATTGACAAGGGCAAGTACATTGTCCGCGAGGTGCGCACGCTGATGAATAAAAAGGATGAAGAACACTATGGTTTGAGGGAACTCATGGATCAAGTGGTAAGGAACACACCAAACCTCATAGGATTTGGGAGGTTCCTAGAGTTGGCAATGCAATGCGTTGAGGAATCAGCTGCAGACCGTCCAACAATGAGTGAAGTTGTGAAAGCACTTGAAACCATTTTGCAGAATGATGGGATGAACACAAACTCTACTTCTGCATCCTCATCTGCCACTGACTTTGGAGCCTCTAAGGGTGGAATGAGGCATCCCTACATTGATGCTACTTTCACTAAGAAGGACAATGCTAATGATAGTAGTAGTAGTGCCTTTGACTACAGCGGAGGGTACACACTTTCAACAAAAGTGGAACCCAAATAG 2904 0.4246 MTILRVLLFLGLLWAEIHVISSFTDTQDVVALRSLKDVWQNTPPSWDKSDDPCGAPWEGVTCNKSRVTSLGLSTMGLKGKLTGDIGQLTELRSLDLSFNRGLTGPLSPQLGDLSKLNILILAGCSFSGNIPDELGNLSELSFLALNSNNFTGKIPPSLGKLSKLYWLDLADNQLTGPIPVSTSTTPGLDLLLKAKHFHFNKNQLSGSIPSKLFSSEMILIHILFDGNNLSGTIPSTLVLVKTVEVLRLDRNFLTGEVPSDLDNLTNINELNLAHNKFTGPLPDLTGMDTLNYVDLSNNSFDPSEAPTWFTTLPSLTTLVMEFGSLQGSLPSKLFGIPQIQQVKLRNNALNSTLDMGDNICPQLQLVDLQNNEISTVTLSSQYKNTLILIGNPVCSTGLSNTNYCQLQQQAKQPYSTSLANCGRESCPPDQKLSPQSCECAYPYEGMMYFRGPSFRELSNVNTFHSLEMSLWVKLGLTPGSVSLQNPFFNSDDYLQVQLALFPPIGEYFNRSEVQRIGFELSNQTYKPPKEFGPYYFIAFPYPFPGSHKGASLSKGVVIGIAIGCSVLVLSLIGLAIYAILQKKRAERAIGLSRPFASWAPSGKDSGGAPQLKGARWFSYDELKKSTNHFSESNEIGFGGYGKVYKGVLPDGKIVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLVGLVGFCFEQGEQMLVYEFMPNGTLRESLSGRSDIHLDWKRRLRIALGSARGLAYLHELANPPIIHRDVKSTNILLDENLTAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELITSRQPIDKGKYIVREVRTLMNKKDEEHYGLRELMDQVVRNTPNLIGFGRFLELAMQCVEESAADRPTMSEVVKALETILQNDGMNTNSTSASSSATDFGASKGGMRHPYIDATFTKKDNANDSSSSAFDYSGGYTLSTKVEPK 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02439 967 FunFam Leucine-rich repeat protein kinase family protein 597 704 - -
Pumo4g02439 967 SUPERFAMILY L domain-like 36 398 - -
Pumo4g02439 967 Gene3D Ribonuclease Inhibitor 284 426 IPR032675 -
Pumo4g02439 967 Pfam Protein tyrosine and serine/threonine kinase 632 899 IPR001245 GO:0004672|GO:0006468
Pumo4g02439 967 FunFam Predicted protein 186 407 - -
Pumo4g02439 967 SMART serkin_6 629 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02439 967 PANTHER RECEPTOR-LIKE PROTEIN 55 33 902 - -
Pumo4g02439 967 SUPERFAMILY Protein kinase-like (PK-like) 614 911 IPR011009 -
Pumo4g02439 967 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Pumo4g02439 967 MobiDBLite consensus disorder prediction 907 926 - -
Pumo4g02439 967 Gene3D Ribonuclease Inhibitor 185 283 IPR032675 -
Pumo4g02439 967 Gene3D Phosphorylase Kinase; domain 1 603 704 - -
Pumo4g02439 967 Gene3D Transferase(Phosphotransferase) domain 1 705 924 - -
Pumo4g02439 967 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 705 915 - -
Pumo4g02439 967 MobiDBLite consensus disorder prediction 907 923 - -
Pumo4g02439 967 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672|GO:0006468
Pumo4g02439 967 FunFam Leucine-rich repeat family protein 27 183 - -
Pumo4g02439 967 ProSiteProfiles Protein kinase domain profile. 629 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02439 967 Gene3D Ribonuclease Inhibitor 25 184 IPR032675 -
Pumo4g02439 967 ProSitePatterns Protein kinases ATP-binding region signature. 635 657 IPR017441 GO:0005524
Pumo4g02439 967 CDD STKc_IRAK 635 902 - -
Pumo4g02439 967 MobiDBLite consensus disorder prediction 939 967 - -
Pumo4g02439 967 MobiDBLite consensus disorder prediction 940 957 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02439 Pumo-Chr4 38489402 38496260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02439 6 967 Receptor kinase-like Gene Family AT1G79620 72.077 0.0 1456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Pumo4g02439 PK_Tyr_Ser-Thr 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02439 - - gmx:100792249 1808.11