Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02436 ATGGAAGAAGACCAAGGGTCTCTGGCTACTGGGGTAGGAGAAGAAGGGTCAGAGGGTAATAGAGAAGGTCTTAAGAGCAATGAGCATCGTTCTTGGATGTGCCATATCTGCAACAAAGGCTTCAGTTCAGGTAAAGCCCTTGGGGGACACACCAGAATACACAACATCTCAAGAAAGCAGGTTCATAGGGCCAAACAAGGCCTTAGTGTTGCAAAACTTAAGACCAACAACAACAACAACAAATGGGTGTTGGTAAGTGGCAGCCCCACTTGTTCCCTTTGTGGAAAGAGCTTTTCTTCCATGAAGTCCTTGTTTGGGCACATGAGGTCTCACCCTGAGAGGGTTAGGAAGGGGGGAATTCAAAGCATCACCACTCCAACAATCAATGGGGCATCCTCCAATTCCACATCTTCCTCAACCCTCTCTGATGATTCTGCTGCTGTTGATCTCTCTCAAGCCCTCAGGGGTTGGTCTGTGACTGCCAAGAGAGGCCGCAAAAGCCCTTCTTGCAGCAAATCAAGTTCTGGTTTAGAGGATAATGGGGAGATTGAGCCGCGTATGCAAGAGGCTGTGTATGAGCTCATGTTGCTGGCAAGTGGGAATCCCAAGTGCAAGGAGGAAGAGCTTGATGGTGATCAGATTGAAGAGAAGCCATTGAACAAGATGGGGTGTGAAGAGGGGTTGCTAAACCCGGTTTTTGGGAATTCTGATGAGATAAAGATCAAGAAGAGAAACAGAAAGAAAATGAAATTAACAGAATTAGAAGCAGCTGAGAAGGGGAACAAGTTGGTTAATAGATGCAGAATATGCAATACAACTTTCCCAAGTCACCAAGCCTTGGAGAGTCATCTATGCAGTAATGAAAATCCTAAGAACACTCAGGTCACGGATGAAACTGAATCAGATCATGTGTCAGCCACAAAAGAGGAGCATCATGCCAAAACAACCATGCAAGGGGAAGAAACAGGAACTACTGTTCTTGGGGGTAGTGCTGTGGAAGCCATGAGAGGGTATCACTGTAAAACTGTCAGCAAGACTTTCTCAAATGGTCAAGTCTTTGGGGACCACAAGAGATCTAATTGGACCAGCATGGCAGAAGCTCAGTCATCTCAGGCAACTTCTTCTTCACCAGTAGAAAATGGTCAGAATTGTTCCAAGATTTTGAGTTTTGATCTTAACCAGCTTCCACCTATGGATGTTGAAGAGGGTGTTCAATCAGACTTGTTTATTCCTGCCAATATTATCACATCATCATCCAGTTATGATTCCTCCTCCTAA 1278 0.4523 MEEDQGSLATGVGEEGSEGNREGLKSNEHRSWMCHICNKGFSSGKALGGHTRIHNISRKQVHRAKQGLSVAKLKTNNNNNKWVLVSGSPTCSLCGKSFSSMKSLFGHMRSHPERVRKGGIQSITTPTINGASSNSTSSSTLSDDSAAVDLSQALRGWSVTAKRGRKSPSCSKSSSGLEDNGEIEPRMQEAVYELMLLASGNPKCKEEELDGDQIEEKPLNKMGCEEGLLNPVFGNSDEIKIKKRNRKKMKLTELEAAEKGNKLVNRCRICNTTFPSHQALESHLCSNENPKNTQVTDETESDHVSATKEEHHAKTTMQGEETGTTVLGGSAVEAMRGYHCKTVSKTFSNGQVFGDHKRSNWTSMAEAQSSQATSSSPVENGQNCSKILSFDLNQLPPMDVEEGVQSDLFIPANIITSSSSYDSSS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02436 425 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 247 401 IPR044653 GO:0003700
Pumo4g02436 425 MobiDBLite consensus disorder prediction 295 317 - -
Pumo4g02436 425 Pfam C2H2-type zinc finger 91 113 - -
Pumo4g02436 425 Pfam C2H2-type zinc finger 34 54 - -
Pumo4g02436 425 MobiDBLite consensus disorder prediction 123 143 - -
Pumo4g02436 425 MobiDBLite consensus disorder prediction 161 182 - -
Pumo4g02436 425 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Pumo4g02436 425 MobiDBLite consensus disorder prediction 287 322 - -
Pumo4g02436 425 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Pumo4g02436 425 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Pumo4g02436 425 Gene3D Classic Zinc Finger 12 115 - -
Pumo4g02436 425 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Pumo4g02436 425 Pfam Zinc-finger of C2H2 type 267 286 - -
Pumo4g02436 425 MobiDBLite consensus disorder prediction 164 178 - -
Pumo4g02436 425 SMART c2h2final6 32 54 IPR013087 -
Pumo4g02436 425 SMART c2h2final6 89 111 IPR013087 -
Pumo4g02436 425 SMART c2h2final6 265 285 IPR013087 -
Pumo4g02436 425 SUPERFAMILY beta-beta-alpha zinc fingers 31 111 IPR036236 -
Pumo4g02436 425 MobiDBLite consensus disorder prediction 1 25 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02436 30 118 C2H2 Transcription Factor Family AT2G26940 43.689 5.12e-15 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo4g02436 zf-C2H2_6 8.5e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02436 - - gmx:102667003 533.102